Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BBPC_RS00480 Genome accession   NZ_AP012330
Coordinates   125071..126915 (+) Length   614 a.a.
NCBI ID   WP_033524176.1    Uniprot ID   -
Organism   Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 strain JCM 1200     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 120071..131915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBPC_RS00460 (BBPC_0091) thiS 120824..121018 (-) 195 WP_003833700.1 sulfur carrier protein ThiS -
  BBPC_RS00465 (BBPC_0092) - 121421..122494 (+) 1074 WP_193345784.1 aldo/keto reductase -
  BBPC_RS00470 (BBPC_0093) - 122706..123197 (+) 492 WP_004223035.1 MarR family winged helix-turn-helix transcriptional regulator -
  BBPC_RS00475 (BBPC_0094) rcrP 123305..125056 (+) 1752 WP_004223038.1 ABC transporter ATP-binding protein Regulator
  BBPC_RS00480 (BBPC_0095) rcrQ 125071..126915 (+) 1845 WP_033524176.1 ABC transporter ATP-binding protein Regulator
  BBPC_RS00485 (BBPC_0096) - 126976..128037 (-) 1062 WP_004223043.1 FAD:protein FMN transferase -
  BBPC_RS00490 (BBPC_0097) - 128446..130140 (+) 1695 WP_004223048.1 FTR1 family protein -
  BBPC_RS00495 (BBPC_0098) - 130230..130892 (+) 663 WP_003833714.1 iron transporter -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 67538.36 Da        Isoelectric Point: 6.2934

>NTDB_id=65130 BBPC_RS00480 WP_033524176.1 125071..126915(+) (rcrQ) [Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 strain JCM 1200]
MARGPMGRSRGPVEKPKDFGGVMSKLAKFCRHYIPVMIFALILGAAGTICQIVGPDKLKDMTNEITKGLPAMVHGRPVMH
SIDMDAVSRIAWLLVALYVGYALLSYLQSWLMANVTQRTAQELREAISKKINRLPLKYFDKISYGDVLSRITNDVDAIGQ
TLGQSVGSLITSITLFVGALIMMFYNNVIMTLCAIGSALLGLVIMGVIMVASQKYFTRQQIALGDVNGHVEEMYTGHTVV
KAYCGEEDSIEQFEKYNDDLYVSGWKSQFLSGLMMPLMNFIGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQP
LSQFAQAFQNLQRCAAASERVFGFLEEPELADESGKKALLGVGVDGKPQPVRGDVEFSHVRFGYDPDKTIIHDFSASVKA
GQKVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDEQ
IVAACKAVGLHRYIMSLPNGYDTVLDDKASLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGR
TSFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLARNGFYADIYNSQFTLID

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=65130 BBPC_RS00480 WP_033524176.1 125071..126915(+) (rcrQ) [Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 strain JCM 1200]
ATGGCAAGAGGACCAATGGGACGCTCTCGCGGACCCGTGGAAAAGCCGAAGGATTTCGGCGGTGTGATGAGCAAACTGGC
GAAATTCTGCCGTCACTACATTCCTGTGATGATTTTCGCCCTGATTCTGGGTGCAGCCGGCACGATCTGCCAGATTGTCG
GACCGGACAAGCTCAAAGACATGACCAACGAGATCACGAAGGGACTGCCGGCCATGGTGCATGGCAGGCCGGTCATGCAC
TCGATTGATATGGATGCTGTTTCGCGCATCGCATGGCTGCTTGTCGCGCTGTATGTTGGGTACGCGCTGCTGAGCTACTT
GCAGAGCTGGTTGATGGCCAACGTTACGCAGCGCACCGCCCAGGAGCTGCGTGAGGCGATCAGCAAGAAGATTAATCGCC
TGCCGCTCAAATATTTCGACAAGATCAGCTACGGCGATGTGCTCAGCCGCATCACCAACGATGTGGACGCGATCGGCCAG
ACGCTCGGCCAGTCGGTCGGTTCGCTGATCACTTCAATCACGCTGTTCGTCGGCGCGCTCATCATGATGTTCTACAACAA
CGTGATCATGACGCTGTGCGCCATCGGTTCCGCGTTGCTTGGCCTGGTGATCATGGGCGTGATCATGGTCGCCTCGCAGA
AGTACTTCACCCGACAGCAGATCGCGTTGGGAGATGTGAACGGGCACGTTGAGGAAATGTACACCGGCCACACCGTGGTC
AAGGCGTACTGCGGCGAAGAGGACTCCATCGAACAGTTCGAGAAATACAACGATGATCTGTACGTCTCCGGCTGGAAGAG
CCAGTTCCTCTCCGGCCTGATGATGCCGCTCATGAACTTCATCGGCAACTTCGGTTACGTGGTCGTGTGCGTGGTCGGCG
CGGTGCTGGCCATGGACGGCAAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTACATTCGCCTGTTCACGCAACCG
CTTTCCCAGTTCGCGCAGGCGTTCCAGAACCTGCAGCGCTGCGCTGCCGCTTCCGAACGCGTCTTCGGTTTCCTGGAAGA
GCCGGAGCTGGCCGACGAATCCGGCAAGAAAGCACTGCTGGGTGTCGGTGTGGATGGCAAGCCGCAGCCGGTGCGTGGCG
ATGTGGAATTCAGCCACGTGCGGTTCGGCTACGACCCGGACAAGACGATCATCCACGACTTCTCTGCGTCGGTGAAGGCC
GGCCAGAAGGTGGCCATCGTCGGTCCGACCGGTGCCGGCAAGACCACGATGGTCAACCTGCTGATGCGGTTCTACGAGAT
TTCCGGTGGCACGATTTCGATCGACGGCGTCGACACCAAGTCGGTTCCGCGCTGGAATGTGCATGACCAGTTCTCGATGG
TATTGCAGGACACGTGGGTGTTCCGTGGAACGGTGCGTGAAAACATCGCATACTCGAAGCCGGGCGTCACTGACGAGCAG
ATTGTGGCCGCCTGCAAAGCCGTCGGTCTGCACCGCTACATCATGTCTTTGCCGAATGGCTACGACACTGTGCTCGACGA
CAAGGCGTCGCTTTCGCAAGGTCAGAAGCAGCTGCTGACAATCGCCCGCGCCATGGTTGAGGACGCGCCGATTCTGATTC
TAGACGAGGCCACGTCCTCCGTGGATACCCGTACCGAGGAGTTGATTCAGAAGGCCATGGACGCACTGACGGTGGGACGT
ACGAGCTTCGTGATCGCGCACCGACTGTCCACCATCCGCGACGCCGACATGATTTTGGTGATGAACGGCGGCGACATTGT
GGAACGCGGCACCCACGAGGAACTGCTCGCTAGAAACGGCTTCTACGCCGACATCTATAACAGCCAGTTCACGCTGATCG
ACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(392-539)

ABC transporter transmembrane region (ABC_membrane)

(38-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.668

96.254

0.536

Multiple sequence alignment