Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHA37_RS26360 Genome accession   NZ_CP108006
Coordinates   5855613..5857346 (-) Length   577 a.a.
NCBI ID   WP_266909043.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00335     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5850613..5862346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA37_RS26340 (OHA37_26345) - 5850782..5851765 (-) 984 WP_266909039.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OHA37_RS26345 (OHA37_26350) - 5851762..5852343 (-) 582 WP_266909040.1 hypothetical protein -
  OHA37_RS26350 (OHA37_26355) - 5852519..5853625 (+) 1107 WP_266909041.1 RNA polymerase sigma factor -
  OHA37_RS26355 (OHA37_26360) rcrQ 5853691..5855616 (-) 1926 WP_266909042.1 ABC transporter ATP-binding protein Regulator
  OHA37_RS26360 (OHA37_26365) rcrP 5855613..5857346 (-) 1734 WP_266909043.1 ABC transporter ATP-binding protein Regulator
  OHA37_RS26365 (OHA37_26370) - 5857573..5857938 (+) 366 WP_266909044.1 hypothetical protein -
  OHA37_RS26370 (OHA37_26375) - 5857943..5859382 (-) 1440 WP_266909045.1 FGGY family carbohydrate kinase -
  OHA37_RS26375 (OHA37_26380) - 5859534..5859842 (-) 309 WP_266909046.1 YtxH domain-containing protein -
  OHA37_RS26395 (OHA37_26400) - 5860601..5861428 (-) 828 WP_266909047.1 SigB/SigF/SigG family RNA polymerase sigma factor -
  OHA37_RS26400 (OHA37_26405) - 5861624..5862079 (-) 456 WP_266909048.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62628.76 Da        Isoelectric Point: 5.9799

>NTDB_id=651276 OHA37_RS26360 WP_266909043.1 5855613..5857346(-) (rcrP) [Streptomyces sp. NBC_00335]
MLIRLLRTHLGPYRKPIAVLVLLQLLQTSASLYLPTLNADIIDNGVVNGDTGYILRFGALMLGVSLVQLVCNVGAVYYGA
RTAAAFGRDVRAGVFDRVQSFSARELGHFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIFMALSLDVKLSGV
LLAVVPILGLSVGAIVLKTRPLFRKMQTRLDTVNRVLREQITGNRVIRAFIRDDYEKERFREANADLTGVSLAAGKLLAL
MFPTVIVVVNISSVAVVWFGAMRIDAGGMEIGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTESSVVP
PTDPVRKLLHHGRLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLIPRLFDATGGDVLVDGEDVR
RLDPDLLAKTVGMVPQKPYLFSGTVASNLRYGRPEATDEELWHALEVAQAKGFVSELEGGLDAPITQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRSALARETEEATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=651276 OHA37_RS26360 WP_266909043.1 5855613..5857346(-) (rcrP) [Streptomyces sp. NBC_00335]
GTGCTCATACGACTTCTGCGGACCCACCTGGGTCCGTACCGGAAACCGATCGCCGTGCTGGTCCTGCTGCAACTGCTGCA
GACCAGCGCGAGCCTCTACCTGCCCACGCTGAACGCCGACATCATTGACAACGGTGTCGTGAACGGCGACACCGGCTACA
TCCTGCGCTTCGGCGCACTGATGCTCGGCGTCTCGCTGGTCCAGCTCGTCTGCAACGTCGGCGCCGTCTACTACGGCGCC
CGCACCGCCGCGGCCTTCGGCCGGGACGTCCGGGCCGGCGTCTTCGACCGCGTGCAGAGCTTCTCCGCGCGCGAGCTCGG
CCACTTCGGCGCCCCGTCGCTGATCACCCGTACGACGAACGACGTGCAGCAGATCCAGATGCTCGTGCTGATGACCTTCA
CGCTCATGGTCTCCGCGCCGATCATGTGCGTCGGCGGCATCTTCATGGCGCTCTCGCTGGACGTGAAGCTCTCGGGCGTG
CTGCTCGCGGTGGTCCCGATCCTCGGCCTGTCGGTCGGCGCCATCGTGCTGAAGACCCGCCCGCTGTTCCGGAAGATGCA
GACCCGCCTGGACACGGTCAACCGGGTCCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCATCCGCGACG
ACTACGAGAAGGAGCGCTTCCGCGAGGCCAACGCCGACCTCACCGGCGTCTCGCTGGCGGCCGGCAAGCTGCTCGCCCTG
ATGTTCCCGACCGTGATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCGTCTGGTTCGGCGCGATGCGCATCGACGCCGG
CGGGATGGAGATCGGCCAGCTGACGGCGTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCGTCCAGGAGGTCCTGGACACCGAATCCAGCGTGGTCCCG
CCCACCGACCCGGTCCGTAAGCTGCTCCACCACGGCCGCCTGGAACTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCCCCCGTCCTGCGCGGGGTCGACCTCGTGGCCCGCCCCGGCGAGACCACCGCGGTGATCGGCTCCACCGGCAGCGGCA
AGTCCACGCTGCTGGGGCTGATCCCCCGGCTGTTCGACGCGACCGGCGGCGACGTGCTCGTGGACGGGGAGGACGTACGG
CGCCTCGACCCCGACCTGCTCGCCAAGACCGTCGGCATGGTGCCGCAGAAGCCGTACCTCTTCTCCGGCACCGTCGCCAG
CAACCTGCGCTACGGGCGCCCCGAGGCCACCGACGAGGAGCTCTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGGCTTCG
TGTCCGAGCTGGAGGGCGGGCTCGACGCCCCGATCACCCAGGGCGGCACCAACGTCTCCGGCGGCCAGCGCCAGCGGCTC
GCGATCGCGCGCACGCTCGTACAGCGCCCGGAGATCTACCTGTTCGACGACTCGTTCTCGGCCCTGGACTACGCCACGGA
CGCGGCGCTGCGCTCCGCGCTCGCCCGCGAGACCGAGGAGGCGACCGTGGTCATCGTCGCCCAGCGGGTCTCCACGATCC
GCGACGCGGACCGGATCATCGTCCTCGACGAGGGGCAGGTGGTGGGCGAGGGGCGCCACCACGAGCTGATGGCCGGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCGGCGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.697

93.934

0.392