Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHA37_RS26355 Genome accession   NZ_CP108006
Coordinates   5853691..5855616 (-) Length   641 a.a.
NCBI ID   WP_266909042.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00335     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5848691..5860616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA37_RS26340 (OHA37_26345) - 5850782..5851765 (-) 984 WP_266909039.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OHA37_RS26345 (OHA37_26350) - 5851762..5852343 (-) 582 WP_266909040.1 hypothetical protein -
  OHA37_RS26350 (OHA37_26355) - 5852519..5853625 (+) 1107 WP_266909041.1 RNA polymerase sigma factor -
  OHA37_RS26355 (OHA37_26360) rcrQ 5853691..5855616 (-) 1926 WP_266909042.1 ABC transporter ATP-binding protein Regulator
  OHA37_RS26360 (OHA37_26365) rcrP 5855613..5857346 (-) 1734 WP_266909043.1 ABC transporter ATP-binding protein Regulator
  OHA37_RS26365 (OHA37_26370) - 5857573..5857938 (+) 366 WP_266909044.1 hypothetical protein -
  OHA37_RS26370 (OHA37_26375) - 5857943..5859382 (-) 1440 WP_266909045.1 FGGY family carbohydrate kinase -
  OHA37_RS26375 (OHA37_26380) - 5859534..5859842 (-) 309 WP_266909046.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 68764.22 Da        Isoelectric Point: 5.7501

>NTDB_id=651275 OHA37_RS26355 WP_266909042.1 5853691..5855616(-) (rcrQ) [Streptomyces sp. NBC_00335]
MSGPGGRMMMGPPTTRSMDFKGSGKRLLAALARDRAKLWGMILAVVGSVAASVTGPKILGEATDLVFAGIVGRSFDKGLS
KQQALDALRARGDGGMADMLSGTDFTPGKGIDFGAVGSVALWALAVFTVAGLLMLVATRLSNHIMNGTVYRMREQLQAKL
SRLPLSYFDQQKRGEVLSRATNDIDNIGQTIQQTMGQLLNSLLTIVGVLAMMFWISPVLALVALVTIPVSAYVAAKIGKK
SQPQFVAQWKSTGALNAHVEEMYSGHTLVKVFGRQKESAALFAEQNEALYRASFKAQLVSGIMQPVMLFISNINYVLVAV
VGGLKVASGTLSIGDVQAFIQYTRQFSMPLTQVASMANLVQSGVASAERVYELLDAPEQEADAEVPERPENLRGHVTFDK
VAFRYEPDKPLIENLSLSVDPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRSGIGMVLQDTW
LFGGTIAENIAYGATREVTRAEVEEAARAAHADRFVRTLPEGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADLILVMESGSIVEQGTHEELLLSGGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=651275 OHA37_RS26355 WP_266909042.1 5853691..5855616(-) (rcrQ) [Streptomyces sp. NBC_00335]
GTGAGCGGGCCCGGAGGACGGATGATGATGGGACCGCCGACGACGCGGTCCATGGACTTCAAGGGCTCGGGCAAGCGGCT
GCTGGCCGCGCTGGCGCGCGACCGGGCCAAGCTGTGGGGCATGATCCTCGCGGTCGTCGGCAGCGTCGCCGCGTCGGTGA
CCGGGCCGAAGATCCTCGGCGAGGCCACCGACCTCGTGTTCGCGGGGATCGTCGGCCGGAGCTTCGACAAGGGCCTCAGC
AAGCAGCAGGCGCTGGACGCTCTGCGCGCCAGGGGCGACGGCGGGATGGCGGACATGCTGTCCGGCACCGACTTCACCCC
GGGCAAGGGCATCGACTTCGGCGCGGTCGGGTCGGTGGCGCTGTGGGCGCTGGCCGTCTTCACGGTCGCCGGTCTGCTGA
TGCTGGTCGCCACCCGGCTGTCGAACCACATCATGAACGGCACCGTCTACCGGATGCGCGAGCAGCTCCAGGCGAAGCTC
TCGCGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTCAGCCGGGCCACGAACGACATCGACAACAT
CGGGCAGACGATCCAGCAGACGATGGGTCAGCTGCTCAACTCGCTCCTGACGATCGTCGGCGTGCTCGCGATGATGTTCT
GGATCTCGCCGGTGCTGGCGCTGGTCGCGCTGGTGACCATCCCGGTGTCCGCGTACGTGGCCGCGAAGATCGGCAAGAAG
TCACAGCCGCAGTTCGTGGCGCAGTGGAAGTCCACGGGCGCCCTGAACGCGCACGTCGAGGAGATGTACTCGGGCCACAC
CCTGGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGCCCTGTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCCTCCT
TCAAGGCGCAGCTGGTCAGCGGGATCATGCAGCCGGTGATGCTGTTCATCTCGAACATCAACTACGTGCTCGTCGCGGTC
GTCGGCGGTCTGAAGGTGGCCTCGGGCACCCTGTCGATCGGTGACGTCCAGGCCTTCATCCAGTACACGCGCCAGTTCTC
GATGCCGCTGACGCAGGTCGCCTCCATGGCGAACCTGGTGCAGTCCGGCGTCGCCTCCGCGGAGCGGGTCTACGAGCTGC
TGGACGCCCCGGAGCAGGAGGCGGACGCGGAGGTTCCGGAGCGTCCGGAGAACCTGCGCGGGCACGTCACCTTCGACAAG
GTCGCCTTCCGCTACGAGCCCGACAAGCCGCTGATCGAGAACCTCTCGCTGAGCGTCGACCCCGGACAGACGGTCGCGAT
CGTCGGCCCGACCGGCGCCGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGGGAGATCG
CCCTCGACGGGGTGGACATCGCGAAGATGACCCGCGAGGAACTGCGCAGCGGCATCGGCATGGTGCTCCAGGACACCTGG
CTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGAGCCACGCGCGAGGTCACGCGCGCCGAGGTCGAGGAGGCCGC
GCGGGCGGCCCACGCCGACCGGTTCGTCCGCACCCTGCCCGAGGGCTACGACACGGTGCTGGACGACGAGGGCGCCGGCG
TCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGACGAGGCG
ACGAGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTCGCGCACGGCCGTACGTCCTTCGT
GATCGCGCACCGGCTGTCCACGATCCGCGACGCGGACCTGATCCTGGTCATGGAGAGCGGCTCGATCGTGGAACAGGGCA
CGCACGAGGAGCTGCTGCTCTCGGGCGGCGCCTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTC
GACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(56-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.806

96.724

0.395