Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   L3474_RS09055 Genome accession   NZ_CP091450
Coordinates   1783100..1784137 (-) Length   345 a.a.
NCBI ID   WP_000727280.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 3641/15     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1778100..1789137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3474_RS09030 (L3474_08965) - 1778839..1780170 (-) 1332 WP_000390039.1 hemolysin family protein -
  L3474_RS09035 (L3474_08970) endA 1780461..1781285 (-) 825 WP_001036785.1 DNA-entry nuclease EndA Machinery gene
  L3474_RS09040 (L3474_08975) - 1781324..1781512 (-) 189 WP_001036519.1 DNA-directed RNA polymerase subunit beta -
  L3474_RS09045 (L3474_08980) murA 1781505..1782788 (-) 1284 WP_000358028.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  L3474_RS09050 (L3474_08985) - 1782812..1783042 (-) 231 WP_000615437.1 DUF1146 family protein -
  L3474_RS09055 (L3474_08990) sepM 1783100..1784137 (-) 1038 WP_000727280.1 SepM family pheromone-processing serine protease Regulator
  L3474_RS09060 (L3474_08995) coaD 1784121..1784609 (-) 489 WP_001280766.1 pantetheine-phosphate adenylyltransferase -
  L3474_RS09065 (L3474_09000) rsmD 1784599..1785138 (-) 540 WP_000706960.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  L3474_RS09070 (L3474_09005) asnA 1785203..1786195 (-) 993 WP_000747993.1 aspartate--ammonia ligase -
  L3474_RS09075 (L3474_09010) - 1786307..1786990 (-) 684 WP_001016913.1 Bax inhibitor-1/YccA family protein -
  L3474_RS09080 (L3474_09015) - 1787046..1787786 (-) 741 WP_000152701.1 RNA methyltransferase -
  L3474_RS09085 (L3474_09020) - 1787820..1788098 (+) 279 WP_001174613.1 acylphosphatase -
  L3474_RS09090 (L3474_09025) yidC 1788176..1789102 (+) 927 WP_000835948.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37567.60 Da        Isoelectric Point: 5.0724

>NTDB_id=651275 L3474_RS09055 WP_000727280.1 1783100..1784137(-) (sepM) [Streptococcus pneumoniae strain 3641/15]
MKKKIRWPLYVIAALIVTFLAFVVPLPYYIEVPGGSEDIRQVLKVNDTEDKEAGAYQFVTVGVQHATLAHMIYAWLTPFT
DIRSAQETTGGSSDVEFMRINQFYMQTSQNMAKYQGLKTAGKDIELKYFGVYVLNVTDNSTFKGILNISDTVTAVNDQTF
DSSKDLIDYVSSQKLGDSVKVTYEEDGQTKSAEGKIITLENGKNGIGIGLIDRTEVISNVPISFSTAGIGGPSAGLMFSL
AIYTQIAHPDLRNGRIVAGTGTIDRDGNVGDIGGIDKKVVASARAGAAIFFTPDNPVSEEEQKAHPDAKNNYQTALEAAK
TIKTDMKIVPVKTLQDAIDYLKNNP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=651275 L3474_RS09055 WP_000727280.1 1783100..1784137(-) (sepM) [Streptococcus pneumoniae strain 3641/15]
ATGAAAAAAAAGATTAGATGGCCCTTATACGTCATTGCGGCCTTGATTGTGACTTTCTTGGCATTTGTAGTGCCCTTGCC
TTATTATATAGAGGTTCCAGGTGGTTCGGAAGATATTCGCCAAGTCCTTAAAGTAAATGACACAGAAGATAAGGAAGCTG
GTGCCTATCAATTCGTTACGGTTGGTGTTCAACATGCCACTTTAGCTCATATGATTTATGCTTGGTTGACACCTTTTACA
GATATTCGTAGTGCTCAGGAGACTACAGGTGGTTCTTCCGATGTTGAATTTATGCGAATCAATCAATTCTACATGCAAAC
ATCGCAAAATATGGCCAAGTATCAAGGACTAAAAACAGCTGGTAAGGATATCGAACTCAAGTACTTTGGAGTTTATGTTT
TGAATGTGACGGATAATTCAACCTTTAAAGGGATTCTCAATATCTCTGATACAGTCACAGCAGTCAATGATCAGACCTTT
GATAGTTCCAAAGACTTGATTGATTACGTCAGTTCTCAAAAATTAGGGGATTCCGTCAAGGTCACCTATGAAGAGGATGG
GCAAACCAAGTCTGCAGAAGGAAAAATCATCACCTTGGAAAATGGCAAAAATGGAATTGGAATCGGCTTGATTGACCGTA
CAGAGGTAATCAGCAATGTCCCAATTAGCTTTTCAACAGCTGGTATTGGCGGTCCAAGTGCTGGTCTCATGTTTAGTCTA
GCTATCTATACTCAAATAGCTCACCCAGATCTTCGTAATGGTCGTATTGTTGCCGGTACAGGTACCATTGACCGCGATGG
TAATGTGGGAGACATTGGAGGTATTGATAAGAAGGTTGTAGCTTCGGCTAGGGCAGGTGCTGCTATTTTCTTTACTCCTG
ATAACCCTGTTAGCGAAGAAGAACAAAAGGCGCATCCGGACGCGAAAAACAACTACCAAACAGCCCTAGAAGCGGCTAAA
ACAATCAAGACGGATATGAAAATCGTGCCCGTTAAAACCCTACAAGATGCGATTGATTACTTGAAAAACAATCCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

59.649

99.13

0.591