Detailed information NTG0651265

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OHA37_RS22650
• Genome accession: NZ_CP108006
• Coordinates: 5004720..5005697 (+)
• Length: 325 a.a.
• NCBI ID: WP_266907934.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00335
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4999720..5010697

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHA37_RS22625 (OHA37_22635)	-	4999825..5000640 (+)	816	WP_266907929.1	TetR/AcrR family transcriptional regulator	-
OHA37_RS22630 (OHA37_22640)	-	5000725..5002260 (+)	1536	WP_266907930.1	MFS transporter	-
OHA37_RS22635 (OHA37_22645)	-	5002405..5003199 (+)	795	WP_266907931.1	class III extradiol ring-cleavage dioxygenase	-
OHA37_RS22640 (OHA37_22650)	-	5003192..5003575 (+)	384	WP_266907932.1	hypothetical protein	-
OHA37_RS22645 (OHA37_22655)	-	5003547..5004194 (-)	648	WP_266907933.1	Uma2 family endonuclease	-
OHA37_RS22650 (OHA37_22660)	rpoS	5004720..5005697 (+)	978	WP_266907934.1	sigma-70 family RNA polymerase sigma factor	Regulator
OHA37_RS22655 (OHA37_22665)	-	5005916..5006890 (-)	975	WP_266907935.1	YafY family protein	-
OHA37_RS22660 (OHA37_22670)	-	5006953..5008548 (+)	1596	WP_266907936.1	MFS transporter	-
OHA37_RS22665 (OHA37_22675)	-	5008689..5009450 (+)	762	WP_266907937.1	DeoR/GlpR family DNA-binding transcription regulator	-
OHA37_RS22670 (OHA37_22680)	pfkB	5009447..5010400 (+)	954	WP_266907938.1	1-phosphofructokinase	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 36566.43 Da
• Isoelectric Point: 5.4071

>NTDB_id=651265 OHA37_RS22650 WP_266907934.1 5004720..5005697(+) (rpoS) [Streptomyces sp. NBC_00335]
MATRAVARRQSASSARAASGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGAIERKGKKPSREELE
FLAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRVQREFNRENGRDPEHAEIAAELDTTEKRVGDVLDWARDPVSLNMGVDEDGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKKMARDTG
FDAVA

Nucleotide

• Length: 978 bp

>NTDB_id=651265 OHA37_RS22650 WP_266907934.1 5004720..5005697(+) (rpoS) [Streptomyces sp. NBC_00335]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAATCCGCGAGCAGCGCTCGCGCTGCGAGCGGGGAGATCGCAGACCGCGACCT
GGTCGGCATGTACCTGGACGAGATCGCGCGTACCCCGCTGCTCGACGCGGCCAAGGAAGTGGAGCTCTCGCAGATCATCG
AGGCGGGCGTGTACGCCCAGCAGATCCTCGACGGCGCGATAGAGCGCAAGGGCAAGAAGCCCTCCCGGGAGGAGCTCGAA
TTCCTGGCCGCGGAGGGTGAGCGCGCCAAGGAAGTCTTCATCCGGTCCAACCTCCGCCTGGTCGTCGCCGTGGCCCGCCG
CTACCCGCGCAGCGGTCTGCCGCTCCTCGACCTCATCCAGGAGGGCAACGCCGGCCTGGTCCGCGCCGTGGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCGATCACCCGCTCCATCGCCGACCAG
TCCCGCACCATCCGCCTGCCCGTCCACCTGGTGGAGGAGCTCGGCCGGATCCGCCGGGTCCAGCGCGAGTTCAACCGCGA
GAACGGCCGCGACCCGGAGCACGCGGAGATCGCCGCCGAGCTGGACACGACGGAGAAGCGCGTCGGCGACGTCCTGGACT
GGGCGCGCGATCCGGTCAGCCTGAACATGGGCGTGGACGAGGACGGCGACACGCAGTTCGGCGATCTGCTCGAAGACACC
TCGGCGATCTCCCCCGAGCAGTCCGTCCTCTCCCTCCTCCGCAGCGAGGAGCTGGAGGACCTGCTGGGCAAGCTGGACCA
GCGAACCGCGTCGATCATCAAGATGCGTTACGGCATTGAAGACGGTCGAGAGCGTACGCTTACTGAAGTCGGCAAGCAGC
ACGGGCTGACCCGCGAGCGAATCCGCCAGATCGAGAAGCACGCGCTGCTCGAACTGAAGAAGATGGCCCGCGACACCGGC
TTCGACGCGGTGGCCTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (172-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (26-59)

• Sigma-70 region 2 (Sigma70_r2) (93-162)

• Sigma-70, region 4 (Sigma70_r4) (261-314)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	39.667	92.308	0.366