Detailed information NTG0065126

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H7R16_RS04845
• Genome accession: NZ_AP022030
• Coordinates: 1003050..1004042 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WP3-S18-ESBL-07
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 998050..1009042

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7R16_RS04815 (WP3S18E07_09430)	ispD	998111..998821 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H7R16_RS04820 (WP3S18E07_09440)	ispF	998821..999300 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H7R16_RS04825 (WP3S18E07_09450)	truD	999297..1000346 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
H7R16_RS04830 (WP3S18E07_09460)	surE	1000327..1001088 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H7R16_RS04835 (WP3S18E07_09470)	pcm	1001082..1001708 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H7R16_RS04840 (WP3S18E07_09480)	nlpD	1001893..1002987 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
H7R16_RS04845 (WP3S18E07_09490)	rpoS	1003050..1004042 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H7R16_RS04850 (WP3S18E07_09500)	ygbN	1004136..1005500 (-)	1365	WP_049254918.1	GntP family transporter	-
H7R16_RS04855 (WP3S18E07_09510)	ygbM	1005589..1006365 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
H7R16_RS04860 (WP3S18E07_09520)	ygbL	1006370..1007008 (-)	639	WP_001278994.1	aldolase	-
H7R16_RS04865 (WP3S18E07_09530)	otnK	1007005..1008267 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=65126 H7R16_RS04845 WP_000081550.1 1003050..1004042(+) (rpoS) [Escherichia coli strain WP3-S18-ESBL-07]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=65126 H7R16_RS04845 WP_000081550.1 1003050..1004042(+) (rpoS) [Escherichia coli strain WP3-S18-ESBL-07]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715