Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BBKW_RS00560 Genome accession   NZ_AP012327
Coordinates   151523..153367 (+) Length   614 a.a.
NCBI ID   WP_033500641.1    Uniprot ID   -
Organism   Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 strain JCM 15439     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 146523..158367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBKW_RS00540 (BBKW_0105) thiS 147172..147366 (-) 195 WP_003833700.1 sulfur carrier protein ThiS -
  BBKW_RS00545 (BBKW_0106) - 147875..148948 (+) 1074 WP_193786576.1 aldo/keto reductase -
  BBKW_RS00550 (BBKW_0107) - 149159..149650 (+) 492 WP_033500639.1 MarR family winged helix-turn-helix transcriptional regulator -
  BBKW_RS00555 (BBKW_0108) rcrP 149757..151508 (+) 1752 WP_033500640.1 ABC transporter ATP-binding protein Regulator
  BBKW_RS00560 (BBKW_0109) rcrQ 151523..153367 (+) 1845 WP_033500641.1 ABC transporter ATP-binding protein Regulator
  BBKW_RS00565 (BBKW_0110) - 153615..154595 (+) 981 WP_033500642.1 aldo/keto reductase -
  BBKW_RS00570 (BBKW_0111) - 154851..155915 (-) 1065 WP_033500643.1 FAD:protein FMN transferase -
  BBKW_RS00575 (BBKW_0112) - 156665..158359 (+) 1695 WP_033500794.1 FTR1 family iron permease -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 67413.23 Da        Isoelectric Point: 6.3523

>NTDB_id=65125 BBKW_RS00560 WP_033500641.1 151523..153367(+) (rcrQ) [Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 strain JCM 15439]
MARGPMGRSRGPVEKPKDFGGVMSKLAKFCRHYIPVMIFALILGAAGTICQIVGPDKLKDMTNEITKGLPAMVHGRPVMN
SIDMDAVSRIAWLLVALYVGYALLSYLQSWLMANVTQRTAQELREAISKKINRLPLKYFDKVSYGDVLSRITNDVDAIGQ
TLGQSVGSLITSITLFVGALIMMFYNNVIMTLCAIGSALLGLVVMGVIMVASQKYFTRQQIALGDVNGHVEEMYTGHTVV
KAYCGEEDSIEQFEKYNDDLYVSGWKSQFLSGLMMPLMNFIGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQP
LAQFAQAFQNLQRCAAASERVFGFLEEPELADESGKKALLGVGVDGKPQPVRGDVEFSHVRFGYDPDKTIIHDFSASVKA
GQKVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTGEQ
IVAACKAVGLHRYIMSLPNGYDTVLDDKASLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGR
TSFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLARNGFYADIYNSQFTLID

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=65125 BBKW_RS00560 WP_033500641.1 151523..153367(+) (rcrQ) [Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 strain JCM 15439]
ATGGCAAGAGGACCGATGGGACGCTCTCGCGGACCCGTGGAAAAGCCGAAGGATTTCGGCGGTGTGATGAGCAAACTGGC
GAAATTCTGCCGTCACTACATTCCTGTGATGATTTTCGCCCTGATTCTGGGTGCAGCCGGCACGATCTGCCAGATTGTCG
GACCGGACAAGCTCAAAGACATGACCAACGAGATCACGAAGGGGCTGCCGGCCATGGTGCATGGCAGGCCGGTCATGAAT
TCGATCGATATGGATGCTGTCTCGCGCATCGCATGGCTGCTTGTCGCGCTGTATGTTGGGTACGCGCTGCTGAGCTACCT
GCAGAGCTGGTTGATGGCCAACGTTACGCAGCGCACCGCGCAGGAGCTGCGTGAGGCGATCAGCAAGAAGATTAATCGCC
TGCCGCTCAAATATTTCGACAAGGTCAGCTACGGCGATGTGCTCAGCCGCATCACCAACGATGTGGACGCGATCGGCCAG
ACGCTCGGCCAGTCGGTCGGCTCGCTGATCACTTCAATCACGCTGTTCGTCGGCGCGCTCATCATGATGTTCTACAACAA
CGTGATCATGACGCTGTGCGCCATCGGTTCCGCGTTGCTTGGCCTGGTGGTCATGGGAGTGATCATGGTCGCCTCGCAGA
AGTACTTCACCCGACAGCAGATCGCGTTGGGAGATGTGAACGGGCACGTTGAGGAAATGTACACCGGCCACACCGTGGTC
AAGGCATACTGTGGCGAAGAGGACTCCATCGAACAGTTCGAGAAGTACAACGATGATCTGTACGTCTCCGGCTGGAAGAG
CCAGTTCCTCTCCGGCCTGATGATGCCGCTCATGAACTTCATCGGCAACTTCGGTTACGTGGTCGTGTGCGTGGTCGGCG
CGGTGCTGGCCATGGACGGCAAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTACATTCGCCTGTTCACGCAACCG
CTTGCCCAGTTCGCGCAGGCGTTCCAGAACCTGCAGCGCTGCGCTGCCGCCTCCGAACGCGTCTTCGGTTTCCTGGAAGA
GCCGGAGCTGGCCGACGAATCCGGCAAGAAAGCACTGCTGGGTGTCGGTGTGGATGGCAAGCCGCAGCCGGTGCGTGGCG
ATGTGGAATTCAGTCACGTGCGGTTCGGCTACGACCCGGACAAGACGATCATCCACGACTTCTCCGCGTCGGTGAAGGCC
GGCCAGAAGGTGGCCATCGTCGGCCCGACCGGTGCCGGCAAGACCACGATGGTCAATCTGCTGATGCGGTTCTACGAGAT
TTCCGGCGGCACGATTTCGATCGACGGCGTCGACACCAAGTCGGTTCCGCGCTGGAATGTGCACGACCAGTTTTCGATGG
TATTGCAGGACACGTGGGTGTTCCGTGGAACGGTACGTGAAAACATCGCATACTCGAAGCCGGGCGTCACTGGCGAGCAG
ATTGTAGCCGCCTGCAAAGCCGTCGGTCTGCACCGCTACATCATGTCTCTGCCGAATGGCTACGACACTGTGCTCGACGA
CAAGGCGTCGCTTTCGCAAGGTCAGAAGCAGCTGCTGACAATCGCCCGCGCCATGGTTGAGGACGCGCCGATTCTGATTC
TAGACGAGGCCACGTCCTCCGTGGATACCCGTACCGAGGAGTTGATTCAGAAGGCCATGGACGCACTGACGGTGGGACGC
ACGAGCTTCGTGATCGCGCACCGACTGTCCACCATCCGCGACGCCGACATGATTTTGGTGATGAACGGCGGCGACATTGT
GGAACGCGGCACCCACGAGGAACTGCTCGCTAGAAACGGCTTCTACGCCGACATCTATAACAGCCAGTTCACGCTGATCG
ACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(38-321)

ABC transporter (ABC_tran)

(392-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.668

96.254

0.536

Multiple sequence alignment