Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BBKW_RS00555 Genome accession   NZ_AP012327
Coordinates   149757..151508 (+) Length   583 a.a.
NCBI ID   WP_033500640.1    Uniprot ID   A0AAJ1ULQ0
Organism   Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 strain JCM 15439     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 144757..156508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBKW_RS00530 (BBKW_0103) - 145333..146247 (-) 915 WP_081962245.1 thiazole synthase -
  BBKW_RS00535 (BBKW_0104) thiF 146331..147044 (-) 714 WP_033500638.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  BBKW_RS00540 (BBKW_0105) thiS 147172..147366 (-) 195 WP_003833700.1 sulfur carrier protein ThiS -
  BBKW_RS00545 (BBKW_0106) - 147875..148948 (+) 1074 WP_193786576.1 aldo/keto reductase -
  BBKW_RS00550 (BBKW_0107) - 149159..149650 (+) 492 WP_033500639.1 MarR family winged helix-turn-helix transcriptional regulator -
  BBKW_RS00555 (BBKW_0108) rcrP 149757..151508 (+) 1752 WP_033500640.1 ABC transporter ATP-binding protein Regulator
  BBKW_RS00560 (BBKW_0109) rcrQ 151523..153367 (+) 1845 WP_033500641.1 ABC transporter ATP-binding protein Regulator
  BBKW_RS00565 (BBKW_0110) - 153615..154595 (+) 981 WP_033500642.1 aldo/keto reductase -
  BBKW_RS00570 (BBKW_0111) - 154851..155915 (-) 1065 WP_033500643.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64410.43 Da        Isoelectric Point: 5.0988

>NTDB_id=65124 BBKW_RS00555 WP_033500640.1 149757..151508(+) (rcrP) [Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 strain JCM 15439]
MLRIVRYLSKAEIVQMLIALVSIVGQIWFDLTLPDYMADITQLVETPGSEMSDIWIAGGKMLLVSLGSVACAVVTGFIAA
RVGASFSQRLRSLEFKKVESFGPAEMNRFSTASLITRSTNDITQIQMFVTMGLMMLIKAPIMAVWAVCKIANKGLEWTFA
TGVAVAVLLAVISVIMSFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNSEEYQEDKFTEANKELTETQLFANRSMAI
MMPLMNTVMNGLMLAVYWIGAYLIDAAEALDKLTTFSNMVVFSSYSIQVIMSFLLLSMVFVLWPRADVSAQRVLEVIDTD
PMVADGAKTAGKPGVEGEIEFRNVSFAYPDSRQAMLEGVNFTAKKGETVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVNVRDYTLKALRDKIGYVPQQSFLFKGTIASNVAYGDTERNDADVKTACEVAQATEFIDKKDKKYDSSISQGGSNVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALEREAKDSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHHE
LLDNCEVYRQIAESQLSEDELNR

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=65124 BBKW_RS00555 WP_033500640.1 149757..151508(+) (rcrP) [Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 strain JCM 15439]
ATGCTTCGCATTGTGCGATACCTCTCCAAAGCGGAGATAGTCCAGATGCTCATTGCACTGGTCAGCATCGTCGGTCAGAT
CTGGTTCGATCTGACGCTACCGGATTACATGGCCGACATCACGCAGCTCGTGGAAACGCCGGGCAGTGAAATGAGTGATA
TCTGGATAGCGGGCGGCAAAATGCTGCTCGTCTCGCTCGGATCGGTGGCGTGCGCGGTCGTCACCGGCTTCATCGCCGCG
CGCGTCGGCGCGTCGTTCAGCCAACGTCTGCGCTCGCTCGAATTCAAGAAGGTGGAAAGCTTCGGACCGGCGGAAATGAA
CCGTTTCTCCACCGCATCGCTCATCACCCGCTCCACGAACGACATCACGCAGATCCAGATGTTCGTGACCATGGGGCTGA
TGATGCTGATCAAAGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAAATCGCGAACAAAGGCCTTGAATGGACGTTCGCC
ACTGGCGTCGCAGTAGCCGTGCTGCTGGCGGTGATCAGCGTGATCATGAGCTTTGTCATGCCGAAGTTCAAGGCCATGCA
GCGCCTGACCGACAATATCAACCTCGTGGCGCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCATACAACTCCGAGG
AGTACCAGGAAGACAAGTTCACCGAGGCCAACAAGGAACTTACCGAGACCCAGCTGTTCGCCAACCGCTCCATGGCCATC
ATGATGCCGTTGATGAACACCGTCATGAACGGTCTGATGCTGGCCGTCTACTGGATCGGCGCCTACCTCATCGACGCCGC
CGAAGCGCTCGACAAGCTCACCACCTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCATCCAGGTGATCATGAGCTTCC
TGCTGCTGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTCATCGACACCGAT
CCGATGGTCGCCGACGGTGCGAAGACCGCCGGCAAGCCTGGCGTGGAAGGCGAAATCGAATTCCGCAACGTGAGCTTCGC
CTACCCCGATTCGCGTCAAGCTATGTTGGAAGGCGTCAATTTCACAGCCAAGAAGGGCGAAACGGTCGCGTTCATCGGCT
CGACCGGCTCCGGAAAATCGTCTCTCATCAACCTCGTGCCGCGCTTCTATGACGCGACGCAAGGCGAGGTGCTCGTCGAC
GGCGTCAACGTGCGCGACTACACGCTCAAGGCGTTGCGTGACAAGATCGGCTATGTGCCGCAGCAGTCGTTCCTGTTCAA
GGGCACGATCGCCAGCAACGTCGCCTACGGAGATACGGAACGCAACGATGCCGACGTGAAGACGGCATGCGAAGTCGCGC
AGGCCACGGAATTCATCGACAAGAAGGACAAGAAATACGATTCCAGCATTTCGCAGGGCGGCTCCAACGTGTCGGGCGGG
CAGAAACAGCGCCTGTCGATCGCACGCGCCGTCTACCGCCATCCGGAAATCCTGATTTTCGACGACTCCTTCTCCGCGCT
TGATTTCAAGACCGATCGCGCCGTACGCGACGCGCTCGAACGGGAAGCGAAGGATTCCACGAAACTCATCGTCGCGCAGC
GCATCGGCACCATTATGAACGCCGACCGCATCATCGTGCTCGACGACGGCAAAGTCGTTGGTCAAGGCACGCACCACGAA
CTGCTCGACAACTGCGAAGTATACCGGCAGATCGCCGAATCGCAGTTGAGCGAAGACGAGTTGAATCGCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-503)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.168

100

0.513

Multiple sequence alignment