Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OHA37_RS10680 Genome accession   NZ_CP108006
Coordinates   2446007..2447221 (-) Length   404 a.a.
NCBI ID   WP_266904091.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00335     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2441007..2452221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA37_RS10660 (OHA37_10665) - 2441283..2441621 (-) 339 WP_112451060.1 P-II family nitrogen regulator -
  OHA37_RS10665 (OHA37_10670) - 2441618..2442964 (-) 1347 WP_266904089.1 ammonium transporter -
  OHA37_RS10670 (OHA37_10675) - 2443301..2444800 (-) 1500 WP_266912661.1 hypothetical protein -
  OHA37_RS10675 (OHA37_10680) - 2445226..2445897 (+) 672 WP_266904090.1 bifunctional DNA primase/polymerase -
  OHA37_RS10680 (OHA37_10685) pilA 2446007..2447221 (-) 1215 WP_266904091.1 signal recognition particle-docking protein FtsY Machinery gene
  OHA37_RS10685 (OHA37_10690) - 2447371..2448819 (+) 1449 WP_266904092.1 cytosine permease -
  OHA37_RS10690 (OHA37_10695) - 2448883..2449869 (+) 987 WP_266904093.1 LLM class flavin-dependent oxidoreductase -
  OHA37_RS10695 (OHA37_10700) - 2449919..2451352 (-) 1434 WP_266904094.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 42291.51 Da        Isoelectric Point: 4.4475

>NTDB_id=651229 OHA37_RS10680 WP_266904091.1 2446007..2447221(-) (pilA) [Streptomyces sp. NBC_00335]
MEILILAVVIALVAVGAISGLVVSSRKKKQLPPTAPPSTPTITAPPAEPQVGEDAAPTAEEPRRTIEEVVLPEAEAPVAE
PEAPVAEVPAAPEIEVPEPTAGRLVRLRARLARSQNTLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVAPTQELVDRL
RERVKVLGTRTPADLRALLKEELVALLGTDFDRAVKTESGVDTPAVIMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAA
DTFRAAAADQLQTWGDRVGARTVRGPEGGDPASIAYDAVKEGIAQGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGP
LDEILLVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGADDLAPFEPEAFVDA
LIGD

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=651229 OHA37_RS10680 WP_266904091.1 2446007..2447221(-) (pilA) [Streptomyces sp. NBC_00335]
ATGGAAATCCTCATCCTTGCCGTAGTCATCGCCCTGGTCGCGGTCGGTGCGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCCCCACGGCCCCGCCCAGCACGCCGACCATCACTGCCCCGCCCGCCGAGCCGCAGGTGGGGGAGG
ACGCCGCACCGACGGCGGAAGAGCCGCGCCGCACGATCGAAGAGGTCGTGCTGCCCGAGGCCGAGGCCCCGGTCGCGGAG
CCCGAAGCCCCCGTCGCCGAGGTTCCGGCCGCGCCCGAGATCGAGGTGCCCGAGCCCACCGCCGGCCGCCTGGTCCGGCT
GCGCGCCCGCCTCGCCCGGTCGCAGAACACGCTCGGCAAGGGACTGCTCACGCTGCTCTCCCGCGAGCACCTCGACGAGG
ACACCTGGGAGGAGATCGAGGAGACCCTCCTCATCGCCGACGTCGGTGTCGCTCCGACCCAGGAACTGGTGGACCGGCTC
CGCGAGCGGGTCAAGGTGCTCGGCACCCGCACCCCCGCCGATCTGCGCGCCCTGCTGAAGGAGGAGCTGGTCGCGCTCCT
CGGTACCGACTTCGACCGCGCCGTGAAAACCGAGAGCGGCGTGGACACCCCCGCCGTCATCATGGTCGTCGGCGTGAACG
GCACCGGCAAGACCACCACCACCGGCAAGCTCGCCCGCGTGCTCGTCGCCGACGGCCGCAGCGTCGTGCTCGGCGCGGCG
GACACCTTCCGCGCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGACCGGGTCGGGGCGCGCACCGTGCGCGGACCCGA
GGGTGGTGACCCGGCCTCGATCGCCTACGACGCGGTCAAGGAGGGCATCGCCCAGGGCGCCGACGTGGTGCTCATCGACA
CGGCGGGCCGCCTGCACACCAAGACCGGCCTGATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTGGAGAAGCACGGTCCG
CTCGACGAGATCCTGCTGGTCCTGGACGCCACCACCGGGCAGAACGGCCTGACCCAGGCCCGGGTCTTCGCGGAGGTCGT
GGACATCACCGGCATCGTGCTGACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCATCGCCGTCCAGCGCGAGCTCG
GCGTCCCGGTCAAGCTCGTCGGCCTCGGCGAGGGCGCGGACGACCTGGCGCCCTTCGAGCCGGAGGCCTTCGTCGACGCC
CTGATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(118-183)

SRP54-type protein, GTPase domain (SRP54)

(204-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

39.372

100

0.403