Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHA37_RS00815 Genome accession   NZ_CP108006
Coordinates   170467..171504 (+) Length   345 a.a.
NCBI ID   WP_266901359.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00335     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 165467..176504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA37_RS00800 (OHA37_00795) - 167459..168823 (-) 1365 WP_266901353.1 carbohydrate-binding protein -
  OHA37_RS00805 (OHA37_00800) - 168998..169939 (-) 942 WP_266901355.1 LysR family transcriptional regulator -
  OHA37_RS00810 (OHA37_00805) - 170163..170324 (+) 162 WP_266901357.1 carbohydrate-binding protein -
  OHA37_RS00815 (OHA37_00810) cytR 170467..171504 (+) 1038 WP_266901359.1 LacI family DNA-binding transcriptional regulator Regulator
  OHA37_RS00820 (OHA37_00815) - 171600..174341 (-) 2742 WP_266912425.1 glycosyl hydrolase -
  OHA37_RS00825 (OHA37_00820) - 174624..175928 (+) 1305 WP_266901361.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36848.77 Da        Isoelectric Point: 5.7465

>NTDB_id=651209 OHA37_RS00815 WP_266901359.1 170467..171504(+) (cytR) [Streptomyces sp. NBC_00335]
MPEQSPGSRPTLEAVAARAGVSRATASRVVNGGDGVRKPLVDKVLRAVDELGYVPNHAARTLVTRRTGAVAVVISEPEVR
IFSDPFFSQQIRGISKELTAHDTQLVLLLAEGPGDFDRITRYLSGGHVDGALAFSLHTDDPLPAITRRAGIPTVFGGRPG
WTSAPGERAVPYVDADNRGGARVAVQYLRDLGRERIAHIGGPPDQTSAMDRLDGYRDVLLDTDPTLVAEGAFTVESGARA
MAELLERRPDLDAVFVANDLMASGALRVLRERGIAVPAQVAVVGFDDMDPVAKETDPPLTTINQDIEGQGRLMARLLLRS
LDRTANGTAPDSVITPTMLVRRASA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=651209 OHA37_RS00815 WP_266901359.1 170467..171504(+) (cytR) [Streptomyces sp. NBC_00335]
TTGCCCGAGCAGTCCCCCGGGTCCCGCCCCACCCTGGAAGCCGTCGCGGCGCGTGCGGGGGTCTCCCGGGCCACCGCCTC
GCGGGTCGTCAACGGGGGCGACGGGGTCCGCAAGCCGCTGGTCGACAAGGTGCTCCGGGCGGTCGACGAGCTCGGCTACG
TCCCCAATCACGCGGCCCGGACCCTGGTGACGCGGCGGACGGGCGCGGTGGCCGTCGTCATCTCGGAGCCGGAGGTACGG
ATCTTCTCGGACCCCTTCTTCTCCCAGCAGATCCGGGGCATCAGCAAGGAACTGACCGCCCACGACACCCAGCTCGTGCT
GCTGCTGGCCGAGGGACCGGGGGACTTCGACCGGATCACCCGGTACCTGTCCGGCGGGCACGTGGACGGCGCGCTCGCCT
TCTCCCTGCACACGGACGACCCGCTGCCCGCGATCACCCGGCGAGCGGGGATTCCCACCGTGTTCGGGGGCCGGCCCGGC
TGGACCTCCGCACCCGGCGAACGGGCCGTCCCGTACGTCGACGCCGACAACCGGGGCGGGGCCCGGGTCGCCGTGCAGTA
CCTGCGGGACCTCGGGCGGGAGCGGATCGCGCACATCGGCGGGCCGCCCGACCAGACCTCGGCGATGGACCGCCTCGACG
GCTACCGCGACGTACTGCTGGACACGGATCCGACGCTCGTCGCCGAGGGCGCCTTCACCGTGGAGAGCGGGGCGCGGGCG
ATGGCGGAGCTGCTGGAACGGCGGCCCGACCTGGACGCGGTGTTCGTCGCGAACGACCTGATGGCGTCGGGGGCGCTACG
GGTCCTGCGGGAGCGCGGGATCGCGGTGCCGGCGCAGGTGGCGGTCGTCGGGTTCGACGACATGGACCCGGTGGCCAAGG
AGACCGACCCGCCGCTGACCACCATCAACCAGGACATCGAGGGCCAGGGCCGGCTGATGGCGCGGCTGCTGCTGCGCAGC
CTCGACCGTACGGCGAACGGCACGGCGCCGGACTCGGTGATCACCCCGACCATGCTGGTCCGGCGGGCCTCGGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(185-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.522

100

0.365