Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BBDE_RS00725 Genome accession   NZ_AP012326
Coordinates   190214..192052 (+) Length   612 a.a.
NCBI ID   WP_003844716.1    Uniprot ID   D2Q791
Organism   Bifidobacterium dentium JCM 1195 = DSM 20436 strain JCM 1195     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 185214..197052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBDE_RS00705 (BBDE_0139) thiS 185399..185593 (-) 195 WP_012901796.1 sulfur carrier protein ThiS -
  BBDE_RS00710 (BBDE_0140) - 186458..187483 (+) 1026 WP_033489168.1 aldo/keto reductase -
  BBDE_RS00715 (BBDE_0141) - 187647..188147 (+) 501 WP_003837879.1 MarR family winged helix-turn-helix transcriptional regulator -
  BBDE_RS00720 (BBDE_0142) rcrP 188455..190212 (+) 1758 WP_003837877.1 ABC transporter ATP-binding protein Regulator
  BBDE_RS00725 (BBDE_0143) rcrQ 190214..192052 (+) 1839 WP_003844716.1 ABC transporter ATP-binding protein Regulator
  BBDE_RS00730 (BBDE_0144) - 192188..193327 (-) 1140 WP_003837874.1 ATP-binding protein -
  BBDE_RS00735 (BBDE_0145) - 193505..194551 (-) 1047 WP_003837871.1 FAD:protein FMN transferase -
  BBDE_RS00740 (BBDE_0146) - 194744..196150 (+) 1407 WP_003837869.1 MFS transporter -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 67176.82 Da        Isoelectric Point: 6.6583

>NTDB_id=65120 BBDE_RS00725 WP_003844716.1 190214..192052(+) (rcrQ) [Bifidobacterium dentium JCM 1195 = DSM 20436 strain JCM 1195]
MPRGPMGRGPAEKPKDFGGVMKKLIRFCRRYIPVIIIALVLGAAGTVCQIIGPDKLKDMTNEITKGLPAIVHGKPVMNSI
DFTAVGRIAWLLVALYVGYAVLCYLQSWLMASVTQRTAQQLREEIGRKINRLPLKYFDKVSYGDVLSRITNDVDAIGQTL
GQSLGSLITSVTLFFGALIMMFYNNVILTLCAIGSALLGLIVMGGIMKASQQYFARQQAALGDVNGHVEEMYTGHTVVKA
YGGEADSISRFERYNQDLYVSGWKSQFLSGLMMPLMNFIGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQPLS
QFAQAFQNLQRCAAASERVFGFLEEPELADESDKRPLLGVDADGRPQPVRGDVEFSHVRFGYESDKTIIHDFSASVKSGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKKGVTDEQIV
AACKAVGLHHYIMSLPDGYDTILDDKASLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMDGGDIVERGTHEELLAKGGFYADIYNSQFTLAG

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=65120 BBDE_RS00725 WP_003844716.1 190214..192052(+) (rcrQ) [Bifidobacterium dentium JCM 1195 = DSM 20436 strain JCM 1195]
ATGCCTAGGGGACCAATGGGACGTGGACCTGCTGAAAAACCGAAGGATTTCGGCGGTGTGATGAAGAAACTCATACGTTT
CTGCCGCCGCTACATTCCCGTGATCATCATCGCGCTGGTGCTTGGCGCAGCCGGAACCGTATGCCAGATCATCGGGCCCG
ACAAACTCAAGGACATGACCAACGAGATCACCAAGGGCCTGCCGGCCATCGTACACGGCAAGCCGGTGATGAACTCGATC
GACTTCACCGCGGTCGGCCGTATTGCATGGCTGCTGGTGGCGTTGTATGTCGGCTATGCGGTGCTGTGCTATCTGCAAAG
CTGGCTGATGGCAAGCGTGACGCAACGCACCGCGCAACAGCTGCGCGAGGAGATCGGCCGGAAGATCAATCGCCTGCCGC
TCAAATATTTCGACAAGGTCAGCTACGGCGATGTGCTGAGCCGCATTACCAACGATGTGGACGCGATCGGGCAGACGCTC
GGCCAGTCGCTGGGCTCGCTGATTACGTCGGTCACGCTGTTCTTCGGTGCGCTGATCATGATGTTCTACAACAACGTAAT
CCTAACGTTGTGCGCCATCGGCTCCGCACTGCTCGGCCTGATCGTGATGGGCGGCATCATGAAGGCCTCGCAACAATACT
TCGCGCGCCAGCAGGCGGCCCTCGGCGATGTGAACGGCCATGTTGAGGAGATGTATACCGGGCATACCGTGGTCAAGGCG
TACGGTGGCGAGGCCGATTCCATCAGCCGCTTCGAACGCTACAACCAGGACCTGTACGTGTCTGGTTGGAAGAGCCAGTT
CCTGTCCGGCCTGATGATGCCGCTGATGAATTTCATCGGTAATTTCGGCTATGTGGTCGTATGCGTGGTCGGTGCGGTGC
TTGCGATGGATGGCAAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACGCAGCCGCTGTCG
CAGTTCGCGCAGGCCTTCCAGAACCTGCAACGCTGCGCCGCCGCATCCGAGCGCGTGTTCGGCTTCCTGGAGGAGCCGGA
GTTGGCCGACGAATCCGATAAACGGCCGTTGCTCGGCGTCGATGCGGACGGCAGGCCGCAACCGGTGCGTGGCGACGTGG
AATTCAGCCACGTACGCTTCGGCTACGAATCCGACAAGACGATCATCCACGACTTCTCCGCTTCGGTGAAGTCCGGTCAG
AAGGTCGCCATCGTCGGCCCGACCGGTGCCGGCAAGACCACGATGGTGAACCTGCTTATGCGCTTCTACGAGATTTCCGG
CGGCACGATTTCGATTGATGGCGTCGATACCAAATCGGTGCCGCGTTGGAATGTGCACGATCAGTTCTCGATGGTGCTGC
AGGATACGTGGGTGTTCCGTGGAACGGTGCGTGAAAACATCGCATATTCCAAGAAGGGCGTGACCGACGAGCAGATCGTC
GCCGCATGCAAGGCCGTTGGGTTGCACCACTACATCATGTCGCTGCCGGATGGCTATGACACGATTCTCGATGACAAGGC
GTCGCTGTCGCAGGGTCAGAAGCAGTTGCTGACGATTGCGCGCGCGATGGTGGAGGATGCGCCGATTCTGATTTTGGACG
AGGCGACCTCTTCCGTCGATACGCGTACCGAAGAACTGATTCAGAAGGCGATGGACGCGCTGACGGTGGGGCGTACGAGT
TTCGTGATCGCGCATCGCCTGTCGACGATTCGTGACGCCGACATGATTCTGGTGATGGACGGCGGCGATATCGTAGAGCG
CGGTACGCACGAGGAGCTGCTTGCGAAGGGCGGTTTCTACGCCGATATCTACAACAGTCAGTTCACGCTGGCTGGCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(390-537)

ABC transporter transmembrane region (ABC_membrane)

(35-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2Q791

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.484

96.569

0.526

Multiple sequence alignment