Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BBDE_RS00720 Genome accession   NZ_AP012326
Coordinates   188455..190212 (+) Length   585 a.a.
NCBI ID   WP_003837877.1    Uniprot ID   D2Q790
Organism   Bifidobacterium dentium JCM 1195 = DSM 20436 strain JCM 1195     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 183455..195212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBDE_RS00695 (BBDE_0137) - 183492..184406 (-) 915 WP_003837888.1 thiazole synthase -
  BBDE_RS00700 (BBDE_0138) thiF 184437..185150 (-) 714 WP_003837886.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  BBDE_RS00705 (BBDE_0139) thiS 185399..185593 (-) 195 WP_012901796.1 sulfur carrier protein ThiS -
  BBDE_RS00710 (BBDE_0140) - 186458..187483 (+) 1026 WP_033489168.1 aldo/keto reductase -
  BBDE_RS00715 (BBDE_0141) - 187647..188147 (+) 501 WP_003837879.1 MarR family winged helix-turn-helix transcriptional regulator -
  BBDE_RS00720 (BBDE_0142) rcrP 188455..190212 (+) 1758 WP_003837877.1 ABC transporter ATP-binding protein Regulator
  BBDE_RS00725 (BBDE_0143) rcrQ 190214..192052 (+) 1839 WP_003844716.1 ABC transporter ATP-binding protein Regulator
  BBDE_RS00730 (BBDE_0144) - 192188..193327 (-) 1140 WP_003837874.1 ATP-binding protein -
  BBDE_RS00735 (BBDE_0145) - 193505..194551 (-) 1047 WP_003837871.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64298.31 Da        Isoelectric Point: 5.0934

>NTDB_id=65119 BBDE_RS00720 WP_003837877.1 188455..190212(+) (rcrP) [Bifidobacterium dentium JCM 1195 = DSM 20436 strain JCM 1195]
MLRIMRYLSKAEIGQMLIALVSIIGQIWLDLTLPDYMSNITELVETPGSSMSDIWVAGGKMLAISLGSAACAVVTGYIAA
RVGASFSQRLRSLEFNKVESFGPAEMNRFSTASLITRSTNDITQIQMFITMGLMMIVKSPIMAVWAVCKIAGDGFEWTLA
TGIAVAVLLVAIGILMALVMPKFKSMQRLTDNINLVARENLTGLRVVRAYNAEDYQESKFTQANKELTETQLFTNRAMAV
MMPLMNTIMNGLMLAVYWIGAYLIEAADATDKLTTFANMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVLEVIDTE
PMVVDGSRTAGKSGMEGDIEFRNVSFAYPDSREAMLEGISFKAAKGQTVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVNVRDYTLKALRDKIGYVPQQAFLFKGTIAGNVAYGDTELRERDVKDACDVAQATEFIDKKEHGYESDISQGGANVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAKEAKDSTKLIVAQRIGTIMDADRIVVLDEGRVVGQGTHRE
LLETCEVYRQIAQSQLSEDELKGGR

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=65119 BBDE_RS00720 WP_003837877.1 188455..190212(+) (rcrP) [Bifidobacterium dentium JCM 1195 = DSM 20436 strain JCM 1195]
ATGCTTCGCATCATGCGATACCTCTCCAAAGCGGAGATAGGCCAGATGCTCATAGCGTTGGTCAGCATCATCGGTCAGAT
CTGGCTTGATCTGACCCTGCCGGACTACATGTCCAACATCACCGAACTCGTTGAAACTCCGGGCAGCAGCATGTCCGACA
TCTGGGTGGCAGGCGGCAAAATGCTCGCCATCTCACTGGGATCCGCGGCCTGCGCCGTCGTGACCGGCTACATCGCCGCA
CGCGTGGGCGCCTCATTCAGCCAAAGGCTACGCTCGCTGGAGTTCAACAAGGTCGAAAGCTTCGGACCGGCGGAAATGAA
CCGCTTCTCCACTGCGTCGCTCATCACCCGCTCCACGAACGACATCACGCAGATCCAGATGTTCATCACCATGGGCCTGA
TGATGATCGTCAAGTCGCCGATCATGGCCGTGTGGGCAGTATGCAAGATTGCGGGCGACGGATTCGAATGGACGCTCGCC
ACTGGCATCGCCGTGGCGGTACTGCTGGTCGCGATCGGCATTCTGATGGCGCTGGTCATGCCGAAATTCAAGTCCATGCA
GCGTCTGACGGACAACATCAACCTGGTGGCGCGCGAAAACCTGACCGGCCTGCGCGTGGTGCGCGCCTACAACGCCGAAG
ACTATCAGGAATCGAAATTCACGCAGGCCAACAAGGAACTGACCGAAACCCAGCTGTTCACCAACCGTGCCATGGCGGTC
ATGATGCCGCTGATGAACACCATCATGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCATACCTGATCGAAGCGGC
CGACGCCACCGACAAACTCACCACCTTCGCGAACATGGTGGTGTTCTCCAGCTATTCCGTGCAGGTGATCATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTGTGGCCGCGCGCCGACGTATCCGCACAGCGCGTGCTTGAAGTGATCGACACCGAG
CCGATGGTCGTAGATGGCAGCCGGACTGCGGGAAAGTCCGGCATGGAAGGCGACATCGAATTCCGCAACGTGAGCTTCGC
CTACCCGGATTCGCGCGAGGCCATGCTGGAAGGCATCAGCTTCAAAGCCGCAAAAGGTCAGACGGTCGCGTTCATCGGCT
CGACCGGCTCCGGCAAATCGTCGCTGATCAATCTGGTGCCGCGCTTCTACGACGCCACCCAAGGCGAAGTGCTCGTCGAC
GGCGTGAACGTGCGCGACTACACGCTCAAGGCATTGCGCGACAAGATCGGCTACGTGCCGCAACAGGCGTTCCTGTTCAA
GGGCACCATCGCCGGCAATGTGGCATACGGCGACACCGAACTGCGCGAACGGGACGTGAAGGACGCCTGCGATGTCGCGC
AGGCCACGGAATTCATCGACAAGAAGGAACATGGCTACGAATCCGACATTTCGCAAGGCGGCGCCAACGTGTCCGGCGGG
CAGAAGCAACGACTGTCAATCGCAAGGGCCGTGTATCGGCATCCGGAAATCCTCATCTTCGACGACTCCTTCTCCGCACT
TGACTTCAAAACGGACCGTGCCGTACGCGACGCGCTCGCGAAGGAGGCCAAGGATTCCACGAAACTGATCGTCGCGCAGC
GCATCGGCACCATCATGGATGCCGACCGCATCGTCGTGCTCGACGAAGGCAGGGTGGTCGGACAGGGCACGCACCGTGAA
CTGCTCGAGACCTGCGAGGTGTATCGGCAGATCGCGCAGTCGCAGCTGAGCGAAGACGAACTGAAGGGAGGCCGCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-293)

ABC transporter (ABC_tran)

(356-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2Q790

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.833

100

0.511

Multiple sequence alignment