Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG892_RS30390 Genome accession   NZ_CP108002
Coordinates   6741791..6742585 (-) Length   264 a.a.
NCBI ID   WP_024489034.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00341     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6736791..6747585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG892_RS30375 (OG892_30395) - 6736849..6737646 (+) 798 WP_371630756.1 GNAT family N-acetyltransferase -
  OG892_RS30380 (OG892_30400) - 6737707..6739671 (+) 1965 WP_371630757.1 IucA/IucC family siderophore biosynthesis protein -
  OG892_RS30385 (OG892_30405) - 6739722..6741692 (+) 1971 WP_073737718.1 ATP-dependent DNA helicase -
  OG892_RS30390 (OG892_30410) dinR/lexA 6741791..6742585 (-) 795 WP_024489034.1 transcriptional repressor LexA Regulator
  OG892_RS30395 (OG892_30415) nrdR 6743119..6743631 (+) 513 WP_371630758.1 transcriptional regulator NrdR -
  OG892_RS30400 (OG892_30420) - 6743791..6746697 (+) 2907 WP_073737786.1 vitamin B12-dependent ribonucleotide reductase -
  OG892_RS30405 (OG892_30425) - 6746801..6747337 (-) 537 WP_073737716.1 TerD family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28651.39 Da        Isoelectric Point: 7.4242

>NTDB_id=651197 OG892_RS30390 WP_024489034.1 6741791..6742585(-) (dinR/lexA) [Streptomyces sp. NBC_00341]
MTTTADSAIITAQDRSQSRREPVHAMNDSATNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=651197 OG892_RS30390 WP_024489034.1 6741791..6742585(-) (dinR/lexA) [Streptomyces sp. NBC_00341]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACGTGAGCCGGTGCATGCCATGAA
TGACTCAGCCACGAACACGGAGGGGCCCGAGCCCGCGCGCCCAGCGCGCTCGCTTCCCGGGCGACCTCCTGGAATCCGGG
CGGACAGCTCAGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGGGACTCCGTGCAGCGGCGGGGATACCCC
CCGTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTTTCCAGTACGTCCTCCGTCGCGCATCAGCTCATGGCTCTGGAACG
CAAGGGGTTCCTGCGCCGTGACCCCCACCGACCCCGGGCGTACGAGGTTCGCGGTTCGGACCAGCCCAGCACGCAGCCCA
CGGACACCACCGGGAAGCCCGCGGCTTCGTACGTTCCGTTGGTCGGCCGGATCGCGGCCGGTGGTCCGATCCTCGCCGAG
GAGTCCGTCGAGGACGTCTTTCCACTTCCCCGCCAGCTGGTCGGTGACGGCGAGCTTTTCGTCCTCAAGGTCGTCGGTGA
CTCGATGATCGAAGCGGCGATCTGCGACGGGGACTGGGTCACGGTCCGGCGCCAGCCCGTGGCGGAGAACGGCGACATCG
TGGCGGCGATGCTGGAGGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGGACGGTCATGTCTGGCTGCTCCCCCACAAC
TCCGCGTACCAGCCGATTCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371