Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LZS83_RS07770 Genome accession   NZ_CP091444
Coordinates   1497827..1498429 (-) Length   200 a.a.
NCBI ID   WP_242251218.1    Uniprot ID   -
Organism   Bacillus cereus strain MO2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1492827..1503429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZS83_RS07750 dnaD 1493116..1493823 (+) 708 WP_060630206.1 DNA replication protein DnaD -
  LZS83_RS07755 nth 1493839..1494486 (+) 648 WP_309259918.1 endonuclease III -
  LZS83_RS07760 - 1494490..1495008 (+) 519 WP_063224134.1 YpoC family protein -
  LZS83_RS07765 - 1495032..1497761 (-) 2730 WP_309259919.1 PBP1A family penicillin-binding protein -
  LZS83_RS07770 recU 1497827..1498429 (-) 603 WP_242251218.1 Holliday junction resolvase RecU Machinery gene
  LZS83_RS07775 - 1498533..1499558 (+) 1026 WP_242251219.1 DUF2515 domain-containing protein -
  LZS83_RS07780 - 1499764..1499940 (-) 177 WP_002020884.1 hypothetical protein -
  LZS83_RS07785 - 1500026..1500268 (+) 243 WP_001252039.1 hypothetical protein -
  LZS83_RS07790 - 1500284..1500628 (+) 345 WP_097949079.1 YppE family protein -
  LZS83_RS07795 - 1500655..1500846 (-) 192 WP_000242661.1 YppF family protein -
  LZS83_RS07800 - 1501024..1501524 (+) 501 WP_242251220.1 YppG family protein -
  LZS83_RS07805 - 1501681..1502130 (+) 450 WP_242251221.1 CotD family spore coat protein -
  LZS83_RS07810 - 1502186..1502740 (+) 555 WP_063224128.1 DUF1273 domain-containing protein -
  LZS83_RS07815 gpsB 1502838..1503173 (+) 336 WP_063224127.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23360.63 Da        Isoelectric Point: 9.4541

>NTDB_id=651196 LZS83_RS07770 WP_242251218.1 1497827..1498429(-) (recU) [Bacillus cereus strain MO2]
MTIRYPNGKRFNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=651196 LZS83_RS07770 WP_242251218.1 1497827..1498429(-) (recU) [Bacillus cereus strain MO2]
ATGACCATTCGTTACCCAAATGGAAAACGGTTCAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATAGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCGTTTTGGAATCGTCAA
AATACTGGTGGACGGAAATCGATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635