Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LZS83_RS06445 Genome accession   NZ_CP091444
Coordinates   1255233..1255556 (-) Length   107 a.a.
NCBI ID   WP_000578882.1    Uniprot ID   -
Organism   Bacillus cereus strain MO2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1250233..1260556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZS83_RS06420 - 1250535..1251821 (+) 1287 WP_309259860.1 D-alanyl-D-alanine carboxypeptidase family protein -
  LZS83_RS06425 sipW 1252012..1252581 (+) 570 WP_063224542.1 signal peptidase I SipW -
  LZS83_RS06430 - 1252644..1253231 (+) 588 WP_000172840.1 CalY family protein -
  LZS83_RS06435 - 1253393..1254163 (+) 771 WP_309259861.1 DUF4047 domain-containing protein -
  LZS83_RS06440 calY 1254564..1255157 (+) 594 WP_063224540.1 biofilm matrix protein CalY -
  LZS83_RS06445 sinR 1255233..1255556 (-) 324 WP_000578882.1 helix-turn-helix domain-containing protein Regulator
  LZS83_RS06450 - 1255636..1255770 (-) 135 WP_060630024.1 anti-repressor SinI family protein -
  LZS83_RS06455 inhA1 1256114..1258501 (+) 2388 WP_063224539.1 M6 family metalloprotease immune inhibitor InhA1 -
  LZS83_RS06460 - 1258674..1260041 (+) 1368 WP_242251026.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12359.19 Da        Isoelectric Point: 8.5614

>NTDB_id=651194 LZS83_RS06445 WP_000578882.1 1255233..1255556(-) (sinR) [Bacillus cereus strain MO2]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=651194 LZS83_RS06445 WP_000578882.1 1255233..1255556(-) (sinR) [Bacillus cereus strain MO2]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCCGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGACACTCTACTTCATGATGAAACAACAAAGGAAAATCACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGCGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692