Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpC   Type   Regulator
Locus tag   LZS83_RS05910 Genome accession   NZ_CP091444
Coordinates   1155618..1158218 (+) Length   866 a.a.
NCBI ID   WP_309259843.1    Uniprot ID   -
Organism   Bacillus cereus strain MO2     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context


Location: 1150618..1163218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZS83_RS05875 prsA 1151380..1152237 (-) 858 WP_063224625.1 peptidylprolyl isomerase PrsA -
  LZS83_RS05880 - 1152367..1152498 (-) 132 WP_001120845.1 DUF3941 domain-containing protein -
  LZS83_RS05885 - 1152599..1153456 (+) 858 WP_242251899.1 YitT family protein -
  LZS83_RS05890 - 1153482..1153679 (-) 198 WP_000527393.1 DUF3813 domain-containing protein -
  LZS83_RS05895 - 1153680..1153820 (-) 141 WP_000516816.1 hypothetical protein -
  LZS83_RS05900 - 1153926..1154735 (-) 810 WP_063224624.1 Cof-type HAD-IIB family hydrolase -
  LZS83_RS05905 - 1155227..1155406 (+) 180 WP_000531418.1 YjzC family protein -
  LZS83_RS05910 clpC 1155618..1158218 (+) 2601 WP_309259843.1 ATP-dependent chaperone ClpB Regulator
  LZS83_RS05915 - 1158256..1158438 (-) 183 WP_063224622.1 YjzD family protein -
  LZS83_RS05920 - 1158595..1159329 (+) 735 WP_063224621.1 hydrolase -
  LZS83_RS05925 - 1159359..1160231 (+) 873 WP_309259844.1 NAD(P)-dependent oxidoreductase -
  LZS83_RS05930 comZ 1160285..1160461 (+) 177 WP_009879752.1 ComZ family protein Regulator
  LZS83_RS05935 fabH 1160694..1161626 (+) 933 WP_063224620.1 beta-ketoacyl-ACP synthase III -
  LZS83_RS05940 fabF 1161658..1162896 (+) 1239 WP_000412643.1 beta-ketoacyl-ACP synthase II -

Sequence


Protein


Download         Length: 866 a.a.        Molecular weight: 97433.44 Da        Isoelectric Point: 5.1938

>NTDB_id=651188 LZS83_RS05910 WP_309259843.1 1155618..1158218(+) (clpC) [Bacillus cereus strain MO2]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLFTLLEEQDGLAVRIFQKMNVDIEALKQGAESLIKKKPSVTGSGAE
AGKLYITGALQQLLVRAGKEAEKLQDDYISVEHVLLAFSEEKGDINQLFTRFHITKNNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKEKDFGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGRIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLDGLEADGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTANEIKGIVDKIVKELQGRLDDRHIT
VELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVANNELVVYVK

Nucleotide


Download         Length: 2601 bp        

>NTDB_id=651188 LZS83_RS05910 WP_309259843.1 1155618..1158218(+) (clpC) [Bacillus cereus strain MO2]
ATGGACTTAAATCAAATGACAACAAAAACACAAGAGGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCATCA
AGAAGTAGATACTGTTCATCTCTTGTTTACATTATTAGAAGAGCAAGATGGGTTAGCAGTACGTATTTTTCAAAAAATGA
ATGTCGATATAGAAGCGTTAAAACAAGGCGCCGAAAGTTTAATTAAGAAAAAGCCTTCTGTAACGGGAAGCGGTGCAGAA
GCAGGCAAATTATATATAACAGGTGCTCTGCAACAACTACTTGTAAGAGCAGGAAAAGAAGCAGAGAAATTACAAGATGA
CTATATTTCAGTCGAGCATGTATTGCTTGCTTTTTCTGAAGAAAAAGGCGATATAAACCAATTATTCACAAGATTTCATA
TTACGAAAAATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGTCGTGATTTGGTGGCGGAAGTAAGAGCGGGGAAAATTGACCCTGTTATCGGGCGTGA
TAGTGAAATTCGCCGCGTCATTCGTATCCTTTCACGTAAAACGAAAAATAACCCGGTTTTAATTGGTGAGCCAGGTGTTG
GTAAAACAGCAATCGTTGAAGGATTAGCGCAGCGTATTGTGAAAAAGGACGTACCGGAAGGATTAAAAGATAGAACAATC
TTTGCGTTAGATATGAGTGCACTTGTAGCTGGCGCGAAATTCCGCGGTGAGTTTGAAGAGCGTCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGCCGCATTTTATTATTCATTGATGAACTGCACACAATCGTCGGCGCTGGTAAAACAGAAG
GCGCAATGGACGCAGGGAATATGTTAAAACCAATGCTTGCGCGTGGTGAACTGCATTGTATCGGGGCGACAACACTAGAT
GAATATCGCAAATATATTGAGAAAGATCCAGCGCTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACAATTTCCATTTTACGTGGTTTAAAAGAGCGTTTTGAAATTTATCACGGTGTAAATATTCATGACCGCGCGATTG
TAGCAGCATCTGTTTTATCAGATCGATATATTTCAGATCGATTCTTACCAGATAAAGCGATTGACCTTGTTGATGAAGCA
TGCGCAACAATTCGTACAGAAATTGATTCTATGCCAACAGAATTAGATGAAGTAACGCGCCGCATTATGCAGTTAGAAAT
TGAGGAAGCAGCTCTTGGAAAAGAAAAGGACTTTGGTAGTCAAGAACGTCTAAAAACATTGCAACGTGAATTATCGGATT
TAAAAGAAGTTGCAAGTGGTATGAGAGCGAAATGGGAGAAAGAAAAAGAAGATATTCACAAAGTTCGTGACTTACGTGAA
CATTTGGAGCGTCTGCGCCGTGAATTAGAAGAAGCAGAAGGTAACTACGATTTAAATAAAGCAGCGGAACTTCGTCACGG
GAGAATCCCTGCTATCGAAAAAGAGTTAAAAGAAGCAGAAGAAATGGGCGCGCATAATAAACAAGAAAATCGTTTATTAC
GTGAGGAAGTAAGTGAAGAAGAGATTGCTGATATTGTTTCACGCTGGACTGGTATTCCTGTCGCAAAACTCGTTGAAGGT
GAACGCGAGAAATTATTACGCCTAGAGCAAATTCTATCAGAGCGTGTAATCGGACAAGAGGAAGCGGTAAGCTTAGTATC
AGATGCAGTTCTTCGTGCGCGTGCTGGTATTAAAGACCCGAACCGTCCAATTGGTTCCTTCATCTTCTTAGGACCGACTG
GTGTTGGTAAAACAGAACTTGCAAAAACATTAGCGCAGTCTTTATTCGATAGTGAAGAGCAAATGATTCGTATTGATATG
TCTGAGTATATGGAGAAACACGCTGTGTCACGCTTAATTGGTGCACCTCCTGGATATGTTGGATATGAAGAGGGTGGTCA
ATTAACAGAAGCAGTAAGACGTAAACCGTATTCCGTTATTTTGTTAGATGAAATTGAAAAAGCACATCCAGAAGTATTCA
ACATTTTATTACAAATGTTAGATGATGGACGCATTACAGATTCACAGGGTCGTACAGTAGACTTTAAAAACACGGTTATT
ATTATGACTTCAAACATTGGATCTGCTCATTTATTAGATGGTTTAGAAGCAGATGGCTCAATTAAAGAGGAATCAAGAGA
ACTTGTTATGGGACAATTAAGAGGGCATTTCCGACCAGAGTTTTTAAATCGTGTCGATGAAATTATTTTATTCAAGCCTC
TTACAGCGAATGAAATTAAAGGTATTGTTGATAAAATTGTAAAAGAATTACAAGGTCGTTTAGATGATCGTCACATTACG
GTAGAATTAACAGATGCTGCGAAAGAGTTTGTTGTAGAAGCTGGTTTTGATCCGATGTACGGAGCTCGTCCGTTAAAACG
ATATGTACAGCGTCAAGTTGAGACAAAATTAGCACGAGAATTAATTGCAGGAACGATTACTGACAATAGTCATGTAGTTG
TTGATGTAGCAAATAATGAGTTAGTCGTTTATGTGAAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Bacillus subtilis subsp. subtilis str. 168

47.543

100

0.48

  clpC Lactococcus lactis subsp. cremoris KW2

46.528

83.141

0.387