Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   H7R16_RS01855 Genome accession   NZ_AP022030
Coordinates   411300..411977 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain WP3-S18-ESBL-07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 406300..416977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R16_RS01840 (WP3S18E07_03680) chiA 407667..410360 (+) 2694 WP_049254950.1 bifunctional chitinase/lysozyme -
  H7R16_RS01845 (WP3S18E07_03690) bfd 410529..410723 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  H7R16_RS01850 (WP3S18E07_03700) bfr 410795..411271 (+) 477 WP_000675504.1 bacterioferritin -
  H7R16_RS01855 (WP3S18E07_03710) pilD 411300..411977 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  H7R16_RS01860 (WP3S18E07_03720) gspM 411977..412438 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  H7R16_RS01865 (WP3S18E07_03730) gspL 412435..413598 (-) 1164 WP_001115238.1 type II secretion system protein GspL -
  H7R16_RS01870 (WP3S18E07_03740) gspK 413613..414596 (-) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  H7R16_RS01875 (WP3S18E07_03750) gspJ 414589..415176 (-) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  H7R16_RS01880 (WP3S18E07_03760) gspI 415169..415546 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  H7R16_RS01885 (WP3S18E07_03770) gspH 415543..416052 (-) 510 WP_001076046.1 type II secretion system minor pseudopilin GspH -
  H7R16_RS01890 (WP3S18E07_03780) gspG 416060..416497 (-) 438 WP_032258448.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=65116 H7R16_RS01855 WP_000178161.1 411300..411977(-) (pilD) [Escherichia coli strain WP3-S18-ESBL-07]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=65116 H7R16_RS01855 WP_000178161.1 411300..411977(-) (pilD) [Escherichia coli strain WP3-S18-ESBL-07]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378

Multiple sequence alignment