Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BBCT_RS00415 Genome accession   NZ_AP012325
Coordinates   113339..115183 (+) Length   614 a.a.
NCBI ID   WP_033512756.1    Uniprot ID   -
Organism   Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 strain JCM 1194     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 108339..120183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBCT_RS00395 (BBCT_0078) thiS 109092..109286 (-) 195 WP_003833700.1 sulfur carrier protein ThiS -
  BBCT_RS00400 (BBCT_0079) - 109689..110762 (+) 1074 WP_172620091.1 aldo/keto reductase -
  BBCT_RS00405 (BBCT_0080) - 110974..111465 (+) 492 WP_033512754.1 MarR family winged helix-turn-helix transcriptional regulator -
  BBCT_RS00410 (BBCT_0081) rcrP 111573..113324 (+) 1752 WP_003833708.1 ABC transporter ATP-binding protein Regulator
  BBCT_RS00415 (BBCT_0082) rcrQ 113339..115183 (+) 1845 WP_033512756.1 ABC transporter ATP-binding protein Regulator
  BBCT_RS00420 (BBCT_0083) - 115244..116305 (-) 1062 WP_003833711.1 FAD:protein FMN transferase -
  BBCT_RS00425 (BBCT_0084) - 116714..118408 (+) 1695 WP_003833712.1 FTR1 family protein -
  BBCT_RS00430 (BBCT_0085) - 118498..119160 (+) 663 WP_003833714.1 iron transporter -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 67496.27 Da        Isoelectric Point: 6.1467

>NTDB_id=65115 BBCT_RS00415 WP_033512756.1 113339..115183(+) (rcrQ) [Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 strain JCM 1194]
MARGPMGRSRGPVEKPKDFGGVMSKLAKFCRHYIPVMIFALILGAAGTICQIVGPDKLKDMTNEITKGLPAMVHGRPVMN
SIDMDAVSRIAWLLVALYVGYALLSYLQSWLMANVTQRTAQELREAISKKINRLPLKYFDKISYGDVLSRITNDVDAIGQ
TLGQSVGSLITSITLFVGALIMMFYNNVIMTLCAIGSALLGLVVMGVIMVASQKYFTRQQIALGDVNGHVEEMYTGHTVV
KAYCGEEDSIEQFEKYNDDLYVSGWKSQFLSGLMMPLMNFIGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQP
LSQFAQAFQNLQRCAAASERVFGFLEEPELADESGKKALLGVGVDGKPQPVRGDVEFSHVRFGYEPDKTIIHDFSASVKA
GQKVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGVDTKSVPRWNVHDQFSMVLQDTWVFHGTVRENIAYSKPGVTDEQ
IVAACKAVGLHRYIMSLPNGYDTVLDDKASLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGR
TSFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLARNGFYADIYNSQFTLID

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=65115 BBCT_RS00415 WP_033512756.1 113339..115183(+) (rcrQ) [Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 strain JCM 1194]
ATGGCAAGAGGACCAATGGGACGCTCTCGCGGACCTGTGGAAAAGCCGAAGGATTTCGGCGGTGTGATGAGCAAACTGGC
GAAATTCTGCCGTCACTACATTCCTGTGATGATTTTCGCCCTGATTCTGGGTGCAGCCGGCACGATCTGCCAGATTGTCG
GACCGGACAAGCTCAAAGACATGACCAACGAGATCACGAAGGGACTGCCGGCCATGGTGCATGGCAGGCCGGTCATGAAC
TCGATTGATATGGATGCTGTTTCACGCATCGCATGGCTGCTTGTCGCGCTGTATGTTGGGTACGCGCTGCTGAGCTACCT
GCAGAGCTGGTTGATGGCCAACGTTACGCAGCGCACCGCGCAGGAGCTGCGTGAGGCGATCAGCAAGAAGATTAATCGCC
TGCCGCTCAAATATTTCGACAAGATCAGCTACGGCGATGTGCTCAGCCGCATCACCAACGATGTGGACGCGATCGGCCAG
ACGCTCGGCCAGTCGGTCGGCTCGTTGATCACTTCAATCACGCTGTTCGTCGGCGCGCTCATCATGATGTTCTACAACAA
CGTGATTATGACGCTGTGCGCCATCGGTTCCGCGTTGCTTGGCCTGGTGGTCATGGGCGTGATCATGGTCGCCTCGCAGA
AGTACTTCACCCGACAGCAGATCGCGTTGGGAGATGTGAACGGGCACGTTGAGGAAATGTACACCGGCCACACCGTGGTC
AAGGCGTACTGCGGCGAAGAGGACTCCATCGAACAGTTCGAGAAATACAACGATGATCTGTACGTCTCCGGCTGGAAGAG
CCAGTTCCTCTCCGGCCTGATGATGCCGCTCATGAACTTCATCGGCAACTTCGGTTACGTGGTCGTGTGCGTGGTCGGCG
CGGTGCTGGCCATGGACGGCAAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTACATTCGCCTGTTCACGCAACCG
CTTTCCCAGTTCGCGCAGGCGTTCCAGAACCTGCAGCGCTGCGCTGCCGCTTCCGAACGCGTCTTCGGTTTCCTGGAAGA
GCCGGAGCTGGCCGACGAATCCGGCAAGAAAGCACTGCTGGGTGTCGGTGTGGATGGCAAGCCGCAGCCGGTGCGTGGCG
ATGTGGAATTCAGTCACGTCCGGTTCGGCTACGAACCGGACAAGACGATCATTCACGACTTCTCTGCGTCGGTGAAGGCC
GGCCAGAAGGTGGCCATCGTCGGTCCGACCGGCGCCGGCAAGACCACGATGGTCAATCTGCTGATGCGGTTCTACGAGAT
TTCCGGCGGCACGATTTCGATCGACGGCGTCGATACCAAGTCGGTTCCGCGCTGGAATGTGCACGACCAGTTCTCGATGG
TGTTGCAGGACACGTGGGTGTTCCATGGAACGGTGCGTGAAAACATCGCATACTCGAAGCCGGGCGTCACTGACGAGCAG
ATTGTAGCCGCCTGCAAAGCCGTCGGCCTGCACCGCTACATCATGTCTCTGCCGAATGGATACGACACTGTGCTCGACGA
CAAGGCGTCGCTTTCGCAAGGTCAGAAGCAGCTGCTGACAATCGCCCGCGCCATGGTTGAGGACGCGCCGATTCTGATTC
TCGACGAGGCCACGTCCTCCGTGGATACCCGTACCGAGGAGTTGATTCAGAAGGCCATGGACGCACTGACGGTGGGACGC
ACGAGCTTCGTGATCGCGCACCGACTGTCCACCATCCGCGACGCCGACATGATTTTGGTGATGAACGGCGGCGACATTGT
GGAACGCGGCACCCACGAGGAACTGCTCGCTAGAAACGGCTTCTACGCCGACATCTATAACAGCCAGTTCACGCTGATCG
ACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(392-539)

ABC transporter transmembrane region (ABC_membrane)

(38-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.668

96.254

0.536

Multiple sequence alignment