Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BBCT_RS00410 Genome accession   NZ_AP012325
Coordinates   111573..113324 (+) Length   583 a.a.
NCBI ID   WP_003833708.1    Uniprot ID   B6XSD0
Organism   Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 strain JCM 1194     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 106573..118324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBCT_RS00385 (BBCT_0076) - 107253..108167 (-) 915 WP_003833695.1 thiazole synthase -
  BBCT_RS00390 (BBCT_0077) thiF 108251..108964 (-) 714 WP_003833698.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  BBCT_RS00395 (BBCT_0078) thiS 109092..109286 (-) 195 WP_003833700.1 sulfur carrier protein ThiS -
  BBCT_RS00400 (BBCT_0079) - 109689..110762 (+) 1074 WP_172620091.1 aldo/keto reductase -
  BBCT_RS00405 (BBCT_0080) - 110974..111465 (+) 492 WP_033512754.1 MarR family winged helix-turn-helix transcriptional regulator -
  BBCT_RS00410 (BBCT_0081) rcrP 111573..113324 (+) 1752 WP_003833708.1 ABC transporter ATP-binding protein Regulator
  BBCT_RS00415 (BBCT_0082) rcrQ 113339..115183 (+) 1845 WP_033512756.1 ABC transporter ATP-binding protein Regulator
  BBCT_RS00420 (BBCT_0083) - 115244..116305 (-) 1062 WP_003833711.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64421.52 Da        Isoelectric Point: 5.0959

>NTDB_id=65114 BBCT_RS00410 WP_003833708.1 111573..113324(+) (rcrP) [Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 strain JCM 1194]
MLRIVRYLSKAEIVQMLIALVSIVGQIWFDLTLPDYMADITQLVETPGSEMSDIWIAGGKMLLVSLGSVACAVVTGFIAA
RVGASFSQRLRSLEFKKVENFGPAEMNRFSTASLITRSTNDITQIQMFVTMGLMMLVKAPIMAVWAVCKIANKGLEWTFA
TGIAVAVLLAVIGVIMSFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEEYQEDKFTEANKELTETQLFTNRSMAI
MMPLMNTVMNGLMLAVYWIGAYLIDAAEALDKLTTFSNMVVFSSYSIQVIMSFLLLSMVFVLWPRADVSAQRVLEVIDTD
PMVADGVKTAGKPGMEGEIEFRNVSFAYPDSRQAMLEGVNFTAKKGETVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVDVRDYTLKALRDKIGYVPQQSFLFKGTIASNVAYGDTERNDADVKTACDVAQATEFIDKKDKKYDSGIAQGGSNVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALEREAKNSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHHE
LLDNCEVYRQIAESQLSEDELNR

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=65114 BBCT_RS00410 WP_003833708.1 111573..113324(+) (rcrP) [Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 strain JCM 1194]
ATGCTTCGCATTGTGCGATACCTCTCCAAAGCGGAGATAGTCCAGATGCTCATTGCACTGGTCAGCATTGTCGGTCAGAT
CTGGTTCGATCTGACGCTACCGGATTACATGGCCGACATCACGCAGCTCGTGGAAACGCCAGGCAGTGAAATGAGTGATA
TCTGGATAGCGGGCGGCAAAATGCTGCTCGTCTCGCTCGGATCGGTGGCGTGCGCGGTCGTCACCGGCTTCATCGCCGCG
CGCGTCGGCGCGTCGTTCAGCCAACGTCTGCGCTCGCTCGAATTCAAGAAGGTGGAAAACTTCGGACCGGCGGAAATGAA
CCGTTTCTCCACCGCATCGCTCATCACCCGCTCCACGAACGACATCACGCAGATCCAGATGTTCGTGACCATGGGTCTGA
TGATGCTGGTCAAAGCGCCGATCATGGCCGTGTGGGCCGTATGTAAAATCGCGAACAAAGGCCTTGAATGGACGTTCGCC
ACTGGCATCGCAGTAGCCGTGCTGCTGGCGGTGATCGGCGTGATCATGAGCTTCGTCATGCCGAAGTTCAAGGCCATGCA
GCGCCTGACCGACAATATCAACCTCGTGGCGCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCATACAACGCCGAGG
AGTATCAGGAAGACAAGTTCACCGAAGCCAACAAGGAACTTACCGAGACCCAGCTGTTCACCAACCGCTCCATGGCCATC
ATGATGCCGTTGATGAACACCGTCATGAACGGTCTGATGCTGGCCGTCTACTGGATCGGCGCCTACCTCATCGACGCCGC
CGAAGCGCTCGACAAGCTCACCACCTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCATCCAGGTGATCATGAGCTTCC
TGCTGCTGAGCATGGTGTTCGTGCTCTGGCCACGTGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTCATCGACACCGAT
CCGATGGTCGCCGACGGTGTGAAGACCGCCGGCAAGCCTGGCATGGAAGGCGAAATCGAATTCCGCAACGTGAGCTTCGC
CTACCCCGATTCGCGTCAAGCTATGTTGGAAGGCGTCAATTTCACAGCCAAGAAGGGCGAAACGGTCGCATTCATCGGCT
CGACCGGCTCCGGAAAATCGTCTCTCATCAACCTCGTGCCGCGCTTTTATGACGCGACGCAAGGCGAGGTTCTCGTCGAC
GGCGTTGACGTGCGCGACTACACGCTCAAGGCGTTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCGTTCCTGTTCAA
AGGCACGATTGCCAGCAATGTCGCGTACGGAGATACGGAACGCAACGACGCCGACGTGAAGACGGCATGCGATGTCGCGC
AGGCCACGGAATTCATCGACAAGAAGGACAAGAAATACGATTCCGGCATTGCACAGGGTGGTTCCAACGTGTCGGGCGGG
CAGAAACAGCGCCTGTCGATCGCACGCGCCGTTTACCGTCATCCGGAAATCCTGATTTTCGACGACTCCTTCTCTGCGCT
TGATTTCAAGACCGATCGCGCCGTACGCGACGCGCTCGAACGGGAAGCGAAGAATTCCACGAAACTCATCGTCGCGCAGC
GCATCGGCACCATTATGAACGCCGACCGCATCATCGTGCTCGACGATGGCAAAGTCGTTGGCCAAGGTACGCACCACGAA
CTGCTCGACAACTGCGAAGTATACCGGCAGATCGCCGAATCGCAGTTGAGCGAAGACGAGTTGAATCGCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(356-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6XSD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50

100

0.511

Multiple sequence alignment