Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L1F29_RS31500 Genome accession   NZ_CP091430
Coordinates   6991198..6992565 (-) Length   455 a.a.
NCBI ID   WP_258385916.1    Uniprot ID   -
Organism   Paenibacillus spongiae strain PHS-Z3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6986198..6997565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F29_RS31475 (L1F29_31375) ispD 6986731..6987423 (-) 693 WP_258389869.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  L1F29_RS31480 (L1F29_31380) - 6987504..6988595 (-) 1092 WP_258385912.1 PIN/TRAM domain-containing protein -
  L1F29_RS31485 (L1F29_31385) - 6988760..6989155 (+) 396 WP_258385913.1 DUF1573 domain-containing protein -
  L1F29_RS31490 (L1F29_31390) pssA 6989256..6990005 (-) 750 WP_258385914.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  L1F29_RS31495 (L1F29_31395) disA 6990110..6991186 (-) 1077 WP_258385915.1 DNA integrity scanning diadenylate cyclase DisA -
  L1F29_RS31500 (L1F29_31400) radA 6991198..6992565 (-) 1368 WP_258385916.1 DNA repair protein RadA Machinery gene
  L1F29_RS31505 (L1F29_31405) - 6992810..6993157 (-) 348 WP_258385917.1 antibiotic biosynthesis monooxygenase -
  L1F29_RS31510 (L1F29_31410) clpC 6993289..6995766 (-) 2478 WP_258385918.1 ATP-dependent protease ATP-binding subunit ClpC -
  L1F29_RS31515 (L1F29_31415) - 6995769..6996809 (-) 1041 WP_373876577.1 protein arginine kinase -
  L1F29_RS31520 (L1F29_31420) - 6996883..6997404 (-) 522 WP_258385920.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48989.54 Da        Isoelectric Point: 6.6894

>NTDB_id=651148 L1F29_RS31500 WP_258385916.1 6991198..6992565(-) (radA) [Paenibacillus spongiae strain PHS-Z3]
MAKLKTKFACTDCGTESPKWLGKCPGCGAWNTMVEEKETVVKTQGQGSSLIQTKEKPLSIIHIDSGQEPRIETALQELNR
VLGGGVVPGSLILVGGDPGIGKSTLLLQTSHALAVKGLTVLYISGEESVKQTRLRADRLGALTDTLYVLCETNMEQINEA
IESVQPDFLVIDSIQTVYEPSVSSAPGSVSQVRECTAHFMRVAKVRGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYFEG
ERHHSYRLLRAVKNRFGSTNEIGIFEMGEAGLREVSNPSELFLSERPLGVSGSTVVASMEGTRPVLVELQALVATTNFPS
PRRMSTGIDHNRLSLIIAVLEKRMGMFLQTQDAYLNVAGGVKLDEPAVDLAVAVCIASSFRDAPTRPFDVVFGEIGLTGE
VRAVSRAEQRVKEAQKLGFKRIIMPEKSLKGWSPPTGIEIIGVETVAQALAAALG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=651148 L1F29_RS31500 WP_258385916.1 6991198..6992565(-) (radA) [Paenibacillus spongiae strain PHS-Z3]
ATGGCAAAACTTAAAACAAAATTCGCGTGTACCGACTGCGGCACGGAGTCTCCGAAATGGCTGGGTAAATGCCCGGGCTG
CGGTGCATGGAACACCATGGTGGAAGAGAAAGAAACGGTCGTTAAGACGCAGGGACAGGGCTCTTCGCTCATTCAGACGA
AAGAAAAGCCGCTTTCCATCATACACATAGATAGTGGTCAGGAACCGCGTATTGAAACCGCCTTACAGGAATTGAACCGG
GTGCTGGGCGGGGGTGTGGTTCCAGGGTCGCTTATACTGGTGGGCGGCGACCCCGGGATCGGCAAATCGACGCTCCTCTT
GCAGACATCGCATGCGCTGGCTGTAAAAGGTTTAACCGTCTTATATATTTCCGGCGAGGAATCGGTCAAGCAGACAAGGC
TCCGGGCGGACCGGCTCGGTGCATTGACCGATACGCTGTATGTATTATGTGAGACGAATATGGAGCAAATTAATGAGGCC
ATTGAATCGGTCCAGCCTGATTTTCTCGTTATCGATTCCATACAGACGGTGTATGAGCCCAGCGTATCGTCCGCACCCGG
AAGCGTCTCTCAAGTAAGGGAATGCACGGCTCACTTCATGCGGGTCGCCAAAGTACGGGGCATTGCGACGGTGCTGGTCG
GGCACGTGACGAAGGAAGGGGCGATCGCAGGCCCGCGGCTGCTCGAGCATATGGTGGATTGCGTGCTCTACTTCGAGGGA
GAACGGCATCACTCCTACCGGCTGCTTCGTGCCGTGAAGAATCGTTTCGGCTCCACGAACGAAATCGGGATCTTCGAGAT
GGGGGAGGCAGGTCTCCGGGAAGTAAGCAACCCGTCCGAGCTGTTCCTGTCCGAGAGGCCGCTCGGCGTGTCGGGGTCAA
CCGTCGTGGCAAGCATGGAAGGGACACGTCCCGTGCTCGTGGAGCTGCAGGCGCTTGTCGCTACAACGAATTTCCCGTCA
CCGCGCCGGATGTCGACGGGCATCGATCATAACCGGCTGTCGCTTATTATTGCGGTACTGGAGAAACGGATGGGGATGTT
TCTTCAGACGCAGGACGCTTACTTGAACGTAGCCGGCGGTGTCAAACTGGATGAACCGGCCGTCGATTTGGCGGTGGCGG
TCTGTATCGCTTCGAGCTTTCGGGACGCGCCGACCAGACCGTTCGACGTTGTATTCGGCGAGATCGGCTTGACTGGCGAA
GTGCGTGCCGTGTCGCGTGCGGAGCAGCGGGTGAAGGAAGCCCAGAAGCTTGGTTTCAAGCGTATCATTATGCCAGAGAA
GAGCTTGAAGGGCTGGAGTCCGCCCACCGGCATTGAAATTATAGGCGTAGAGACGGTTGCGCAGGCGCTTGCGGCAGCAC
TCGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(349-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.958

100

0.673
  radA Streptococcus mitis SK321

59.556

98.901

0.589
  radA Streptococcus mitis NCTC 12261

59.556

98.901

0.589
  radA Streptococcus pneumoniae Rx1

59.333

98.901

0.587
  radA Streptococcus pneumoniae D39

59.333

98.901

0.587
  radA Streptococcus pneumoniae R6

59.333

98.901

0.587
  radA Streptococcus pneumoniae TIGR4

59.333

98.901

0.587