Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   L1F29_RS29850 Genome accession   NZ_CP091430
Coordinates   6638765..6639718 (-) Length   317 a.a.
NCBI ID   WP_258385645.1    Uniprot ID   -
Organism   Paenibacillus spongiae strain PHS-Z3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6633765..6644718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F29_RS29830 (L1F29_29730) - 6634792..6635457 (-) 666 WP_258385641.1 GntR family transcriptional regulator -
  L1F29_RS29835 (L1F29_29735) - 6635976..6637001 (-) 1026 WP_258385642.1 siderophore ABC transporter substrate-binding protein -
  L1F29_RS29840 (L1F29_29740) - 6637073..6637831 (-) 759 WP_258385643.1 ABC transporter ATP-binding protein -
  L1F29_RS29845 (L1F29_29745) - 6637828..6638775 (-) 948 WP_258385644.1 iron chelate uptake ABC transporter family permease subunit -
  L1F29_RS29850 (L1F29_29750) ceuB 6638765..6639718 (-) 954 WP_258385645.1 ABC transporter permease Machinery gene
  L1F29_RS29855 (L1F29_29755) - 6640066..6640380 (-) 315 WP_258385646.1 hypothetical protein -
  L1F29_RS29860 (L1F29_29760) - 6641150..6641830 (+) 681 WP_258385647.1 response regulator transcription factor -
  L1F29_RS29865 (L1F29_29765) - 6641827..6643212 (+) 1386 WP_258385648.1 cell wall metabolism sensor histidine kinase WalK -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34748.82 Da        Isoelectric Point: 9.6329

>NTDB_id=651147 L1F29_RS29850 WP_258385645.1 6638765..6639718(-) (ceuB) [Paenibacillus spongiae strain PHS-Z3]
MKTSYLWAALIVLSVCSVFIGVKDISPLDLFSLTDEQIQFLLISRFPRLISLIIAGVSMSVVGLIMQQLSRNKFVSPTTA
GTMDSASLGLLVAIIMFASATPLMKISVAFLFALAGTFVFMKILERVKYKDSIFIPLVGLMFGNVVGSITTFFAYKHDLI
QSLSGWLHGDFSMILKGRYEMLYISVPLVIIAYLYANKFTVAGMGEEFAVNLGLNYRTVVNIGLVIVSLVSAIVILTVGS
IPFLGLIIPNIVTIYQGDHLKKNLPHTALLGATFLIFCDILGRVVIYPYEISIGLTVGVIGSGIFLYLLMRRKTYGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=651147 L1F29_RS29850 WP_258385645.1 6638765..6639718(-) (ceuB) [Paenibacillus spongiae strain PHS-Z3]
ATGAAAACGAGCTATCTATGGGCGGCGCTCATTGTGTTATCGGTGTGCTCCGTGTTTATCGGCGTGAAGGATATTTCGCC
TCTGGATCTGTTCAGCTTAACCGATGAGCAAATCCAATTCTTGCTGATCAGCCGCTTCCCACGGCTCATCAGTCTCATTA
TCGCCGGCGTCAGCATGAGCGTCGTCGGTCTAATCATGCAGCAGCTCAGCCGGAACAAGTTCGTATCGCCGACAACGGCA
GGCACGATGGATTCGGCCAGTCTGGGGCTGCTCGTCGCGATAATCATGTTCGCATCGGCAACACCGCTGATGAAAATATC
CGTCGCGTTTCTATTCGCGCTGGCGGGGACGTTCGTCTTCATGAAAATATTGGAACGCGTAAAGTACAAGGACTCGATCT
TTATTCCGCTCGTCGGTCTGATGTTCGGCAATGTCGTCGGCTCGATTACGACCTTCTTTGCCTACAAGCATGATCTGATT
CAGAGCCTGTCCGGCTGGCTCCACGGCGACTTCTCCATGATTCTGAAGGGGCGCTACGAAATGTTGTACATAAGCGTCCC
GCTGGTCATTATCGCGTACTTGTACGCCAATAAGTTCACGGTCGCCGGCATGGGCGAGGAATTCGCCGTCAATCTGGGCC
TGAATTACCGGACGGTCGTCAACATCGGTCTTGTGATCGTATCGCTGGTCTCGGCCATCGTGATCTTAACGGTCGGCTCC
ATTCCGTTCCTTGGGCTGATCATACCGAACATTGTCACGATTTACCAGGGCGATCATCTGAAGAAGAATTTGCCGCACAC
CGCCTTATTGGGCGCAACCTTCTTAATCTTTTGCGATATATTGGGACGGGTCGTCATCTATCCTTACGAGATTTCCATCG
GACTTACCGTCGGCGTCATCGGAAGCGGCATCTTCCTGTACCTGCTCATGAGGAGAAAGACATATGGGTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.804

98.107

0.498