Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHA41_RS26410 Genome accession   NZ_CP107999
Coordinates   5940725..5942458 (-) Length   577 a.a.
NCBI ID   WP_327336757.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00342     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5935725..5947458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA41_RS26400 (OHA41_26410) - 5937636..5938745 (+) 1110 WP_328696948.1 RNA polymerase sigma factor -
  OHA41_RS26405 (OHA41_26415) rcrQ 5938794..5940725 (-) 1932 WP_328696949.1 ABC transporter ATP-binding protein Regulator
  OHA41_RS26410 (OHA41_26420) rcrP 5940725..5942458 (-) 1734 WP_327336757.1 ABC transporter ATP-binding protein Regulator
  OHA41_RS26415 (OHA41_26425) - 5942627..5944072 (-) 1446 WP_327336756.1 FGGY family carbohydrate kinase -
  OHA41_RS26420 (OHA41_26430) - 5944179..5944478 (-) 300 WP_073735922.1 hypothetical protein -
  OHA41_RS26440 (OHA41_26450) - 5945385..5946599 (-) 1215 WP_327336755.1 transposase -
  OHA41_RS26445 (OHA41_26455) tnpA 5946650..5947078 (+) 429 WP_078617801.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62517.55 Da        Isoelectric Point: 5.7441

>NTDB_id=651113 OHA41_RS26410 WP_327336757.1 5940725..5942458(-) (rcrP) [Streptomyces sp. NBC_00342]
MLIKLLRTYLGPYKKPIALLVVFQLLQTSAALYLPTLNADIIDNGVVKGDTGYILQYGGAMIVVSIAQVVCNIGAVYIGA
RTASALGRDVRASVFDRVQSFSARELGRFGAPSLITRTTNDVQQIQMLTLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVKRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDDYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVEPVTELRAHGHLEIRGADFRYPGAEASVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLAPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEGLEHGLNAPVAQGGTNVSGGQRQRL
SIARTLVQQPEIYLFDDSFSALDYATDAALRAALLRETAAATVVIVAQRVSTIRDADRILVMDEGRVVGSGSHHELMEGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=651113 OHA41_RS26410 WP_327336757.1 5940725..5942458(-) (rcrP) [Streptomyces sp. NBC_00342]
GTGCTCATAAAACTCCTGCGGACCTATCTCGGTCCGTACAAGAAGCCGATCGCGCTGCTGGTCGTCTTCCAGCTGCTCCA
GACCTCCGCCGCCCTCTATCTTCCCACCCTGAACGCCGACATCATTGACAACGGTGTCGTCAAGGGCGACACGGGCTACA
TCCTGCAGTACGGCGGCGCCATGATCGTCGTCAGCATCGCCCAGGTGGTCTGCAACATCGGGGCCGTCTACATCGGCGCC
CGTACCGCGTCCGCGCTCGGCCGCGATGTCCGGGCGTCGGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGTGAGCTCGG
CCGGTTCGGCGCGCCTTCGCTGATCACCCGGACGACCAATGACGTCCAGCAGATCCAGATGCTGACCCTGATGACGTTCA
CGCTGATGGTCTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCCGCGGTG
CTCCTCGCGGTGGTGCCGGTCCTCGGGATCGCGGTGAGCCTGATCGTGAAGCGGATGCGTCCGCTGTTCCGGACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGCGACG
ACTACGAGGAGAAGCGTTTCCGGGGCGCCAACACCGAGCTGACCGATGTGGCGCTGTCCACGGGCCGGCTGATGGCACTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTCGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCTCGTACCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCAGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGATTCCAGCGTGGTGCCG
CCGGTCGAGCCGGTGACCGAACTGCGCGCCCACGGGCATCTGGAGATCCGCGGCGCCGACTTCCGCTACCCCGGTGCCGA
GGCGTCGGTGCTGCGGTCCGTGGACCTGGTGGCCCGGCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGTCTCGTACCCCGGCTGTTCGATGTGACGGACGGCCAGGTGCTGGTCGACGGGACGGACGTACGG
ACGCTGGCTCCGGCACTGCTGGCGAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTGTTCTCCGGAACGGTCGCGAC
CAACCTGCGGTACGGGAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCCCAGGCCAAGGAGTTCG
TCGAGGGCCTGGAGCACGGTCTGAACGCGCCTGTCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAGCGGCTC
TCGATCGCCCGGACGCTGGTCCAGCAGCCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTGGACTACGCCACGGA
CGCCGCGCTGCGCGCGGCGCTGCTGCGGGAGACCGCGGCCGCGACCGTGGTGATCGTCGCGCAGCGGGTGTCCACCATCC
GCGACGCCGACCGGATCCTGGTGATGGACGAGGGCCGGGTGGTCGGCTCCGGCAGCCATCACGAGCTGATGGAAGGCAAT
GAAACATACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.727

95.321

0.388