Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHA41_RS26405 Genome accession   NZ_CP107999
Coordinates   5938794..5940725 (-) Length   643 a.a.
NCBI ID   WP_328696949.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00342     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5933794..5945725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA41_RS26390 (OHA41_26400) - 5933805..5935064 (+) 1260 WP_328696947.1 FAD-dependent oxidoreductase -
  OHA41_RS26395 (OHA41_26405) dnaG 5935523..5937442 (+) 1920 WP_327336760.1 DNA primase -
  OHA41_RS26400 (OHA41_26410) - 5937636..5938745 (+) 1110 WP_328696948.1 RNA polymerase sigma factor -
  OHA41_RS26405 (OHA41_26415) rcrQ 5938794..5940725 (-) 1932 WP_328696949.1 ABC transporter ATP-binding protein Regulator
  OHA41_RS26410 (OHA41_26420) rcrP 5940725..5942458 (-) 1734 WP_327336757.1 ABC transporter ATP-binding protein Regulator
  OHA41_RS26415 (OHA41_26425) - 5942627..5944072 (-) 1446 WP_327336756.1 FGGY family carbohydrate kinase -
  OHA41_RS26420 (OHA41_26430) - 5944179..5944478 (-) 300 WP_073735922.1 hypothetical protein -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69268.58 Da        Isoelectric Point: 5.1938

>NTDB_id=651112 OHA41_RS26405 WP_328696949.1 5938794..5940725(-) (rcrQ) [Streptomyces sp. NBC_00342]
MAGPGGRMMAGGAPTQRSTDFKGSTKRLLKRFAPERATLYVMLAAGALSVALSVVGPKILGKATDLVFAGVIGRQMPEGT
SKEQALAGLHKTNSGLADMLSKVDFTPGKGMDFDAIGHVLLAALITYVGAGLLMLVSTRLSIRVINRVVFQMREDIQTKL
SRLPLSYFDQQKRGEVLSRATNDIDNISQTMQQTMGQLINSVLTIIGVLIMMFWISPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESARDFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLIAV
IGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLLQSGVASAERIFELLDAEEQDADPAKGEGAHPEELRGSVSL
ENVSFRYDPEKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVATMSRDDLRSGIGMVLQD
TWLFGGTIAENIAYGASGEVGREEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLAANGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=651112 OHA41_RS26405 WP_328696949.1 5938794..5940725(-) (rcrQ) [Streptomyces sp. NBC_00342]
ATGGCTGGGCCTGGCGGACGCATGATGGCCGGCGGGGCACCGACCCAGCGGTCCACGGACTTCAAGGGCTCGACGAAGCG
GTTGCTGAAGCGCTTCGCCCCGGAGCGGGCCACGCTGTACGTGATGCTGGCGGCCGGTGCGCTGAGCGTGGCGCTCTCCG
TGGTCGGCCCGAAGATCCTCGGCAAGGCCACCGACCTGGTGTTCGCCGGGGTCATCGGCCGGCAGATGCCGGAGGGGACG
AGCAAGGAGCAGGCCCTCGCGGGACTGCACAAGACCAACAGCGGCCTCGCCGACATGCTCTCCAAGGTGGACTTCACCCC
GGGCAAGGGCATGGACTTCGACGCGATCGGCCATGTGCTGCTGGCCGCGCTGATCACGTACGTCGGTGCCGGGCTGCTGA
TGCTGGTGTCGACGCGGCTGTCGATCCGGGTGATCAACCGGGTCGTGTTCCAGATGCGCGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGCTGTCCTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCGGTGCTGACCATCATCGGCGTGCTGATCATGATGTTCT
GGATCTCCCCGCTGCTGGCACTCGTCGCGCTGGTGACGGTGCCGCTGTCGGTGGTCGTGGCGACCAAGGTGGGCAAGCGC
TCGCAGCCGCAGTTCGTCCAGCAGTGGAAGGTCACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGCCGGCAGGAGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGATCGCCGTC
ATCGGCGGGCTGCGGGTCGCCTCGGGTGCGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTTCTC
CATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGCTGCAGTCCGGGGTGGCCTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCGGAGGAGCAGGACGCCGACCCCGCGAAGGGCGAGGGCGCGCACCCGGAGGAGCTGCGCGGCAGCGTCTCGCTG
GAGAACGTCTCGTTCCGCTACGACCCGGAGAAGCCGCTCATCGAGGACCTGTCGCTGAGTGTCGAGCCGGGTCACACGGT
CGCGATCGTCGGACCGACCGGTGCGGGCAAGACGACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACCGGCGGCC
GGATCGCCCTGGACGGGGTGGACGTCGCGACGATGTCGCGCGACGACCTGCGGTCCGGCATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCGTACGGCGCCTCGGGCGAGGTCGGCCGGGAGGAGATCGAGGA
GGCGGCGCGGGCGGCCCACGCCGACCGCTTCATCCGCACCCTGCCGGACGGCTACGACACGGTGATCGACGACGAGGGCA
CCGGCGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATACTCGTGCTGGAC
GAGGCGACCAGCTCCGTCGACACCCGTACAGAGGTGCTGATCCAGAAGGCGATGGCGCGGCTCGCGCACGGCCGTACGAG
CTTCGTGATCGCGCACCGGCTCTCCACCATCCGGGACGCCGATGTCATCCTCGTGATGGAGAACGGCTCGATCGTCGAGC
AGGGCACGCACGACGAGCTGCTGGCGGCGAACGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGCC
GAGGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(58-350)

ABC transporter (ABC_tran)

(415-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.968

96.89

0.387