Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L3Z43_RS07715 Genome accession   NZ_CP091427
Coordinates   1640702..1641331 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 1000C-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1635702..1646331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3Z43_RS07695 ycbZ 1636103..1637863 (-) 1761 WP_000152888.1 Lon protease family protein -
  L3Z43_RS07700 matP 1638049..1638501 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  L3Z43_RS07705 ompA 1638577..1639617 (-) 1041 WP_069192811.1 porin OmpA -
  L3Z43_RS07710 sulA 1640013..1640483 (-) 471 WP_220731506.1 SOS-induced cell division inhibitor SulA -
  L3Z43_RS07715 sxy/tfoX 1640702..1641331 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L3Z43_RS07720 yccS 1641294..1643456 (-) 2163 WP_000875058.1 YccS family putative transporter -
  L3Z43_RS07725 yccF 1643466..1643912 (-) 447 WP_001261235.1 YccF domain-containing protein -
  L3Z43_RS07730 helD 1644035..1646089 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=651108 L3Z43_RS07715 WP_000839153.1 1640702..1641331(+) (sxy/tfoX) [Escherichia coli strain 1000C-3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=651108 L3Z43_RS07715 WP_000839153.1 1640702..1641331(+) (sxy/tfoX) [Escherichia coli strain 1000C-3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1