Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHA41_RS08205 Genome accession   NZ_CP107999
Coordinates   1940395..1941189 (+) Length   264 a.a.
NCBI ID   WP_024489034.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00342     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1935395..1946189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA41_RS08190 (OHA41_08195) - 1935642..1936178 (+) 537 WP_328695418.1 TerD family protein -
  OHA41_RS08195 (OHA41_08200) - 1936282..1939188 (-) 2907 WP_328695419.1 vitamin B12-dependent ribonucleotide reductase -
  OHA41_RS08200 (OHA41_08205) nrdR 1939348..1939860 (-) 513 WP_073737717.1 transcriptional regulator NrdR -
  OHA41_RS08205 (OHA41_08210) dinR/lexA 1940395..1941189 (+) 795 WP_024489034.1 transcriptional repressor LexA Regulator
  OHA41_RS08210 (OHA41_08215) - 1941288..1943258 (-) 1971 WP_328695420.1 ATP-dependent DNA helicase -
  OHA41_RS08215 (OHA41_08220) - 1943309..1945288 (-) 1980 WP_328695421.1 IucA/IucC family siderophore biosynthesis protein -
  OHA41_RS08220 (OHA41_08225) - 1945349..1946137 (-) 789 WP_328695422.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28651.39 Da        Isoelectric Point: 7.4242

>NTDB_id=651070 OHA41_RS08205 WP_024489034.1 1940395..1941189(+) (dinR/lexA) [Streptomyces sp. NBC_00342]
MTTTADSAIITAQDRSQSRREPVHAMNDSATNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=651070 OHA41_RS08205 WP_024489034.1 1940395..1941189(+) (dinR/lexA) [Streptomyces sp. NBC_00342]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACGTGAGCCGGTGCATGCCATGAA
TGACTCAGCCACGAACACGGAGGGGCCCGAGCCCGCGCGCCCAGCGCGCTCGCTTCCCGGGCGACCTCCTGGAATCCGGG
CGGACAGCTCAGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGGGACTCCGTGCAGCGGCGGGGATATCCC
CCGTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTTTCCAGTACGTCCTCCGTCGCGCATCAGCTCATGGCTCTGGAACG
CAAGGGGTTCCTGCGCCGTGACCCCCACCGACCCCGGGCGTACGAGGTTCGCGGTTCGGACCAGCCCAGCACGCAGCCCA
CGGACACCACCGGGAAGCCCGCGGCTTCGTACGTTCCGTTGGTCGGCCGGATCGCGGCCGGTGGTCCGATCCTCGCCGAG
GAGTCCGTCGAGGACGTCTTTCCGCTTCCCCGCCAGCTGGTCGGTGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGTGA
CTCGATGATCGAAGCGGCGATCTGTGACGGGGACTGGGTCACGGTCCGGCGCCAGCCCGTGGCGGAGAACGGCGACATCG
TGGCGGCGATGCTGGAGGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGGACGGTCATGTCTGGCTGCTCCCCCACAAC
TCCGCGTACCAGCCGATTCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371