Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA62_RS45060 Genome accession   NZ_CP107998
Coordinates   10060666..10061346 (+) Length   226 a.a.
NCBI ID   WP_328685915.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00343     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 10055666..10066346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA62_RS45050 (OHA62_45025) - 10057730..10059334 (-) 1605 WP_328685913.1 multicopper oxidase domain-containing protein -
  OHA62_RS45055 (OHA62_45030) - 10059482..10060669 (+) 1188 WP_328685914.1 histidine kinase -
  OHA62_RS45060 (OHA62_45035) vraR 10060666..10061346 (+) 681 WP_328685915.1 response regulator transcription factor Regulator
  OHA62_RS45065 (OHA62_45040) - 10061373..10061903 (+) 531 WP_328685916.1 hypothetical protein -
  OHA62_RS45070 (OHA62_45045) - 10062120..10063832 (+) 1713 WP_328685917.1 hypothetical protein -
  OHA62_RS45075 (OHA62_45050) - 10063882..10065639 (+) 1758 WP_328685918.1 FAD-binding protein -
  OHA62_RS45080 (OHA62_45055) - 10065636..10066268 (+) 633 WP_328685919.1 LysE family translocator -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24206.97 Da        Isoelectric Point: 4.6487

>NTDB_id=651055 OHA62_RS45060 WP_328685915.1 10060666..10061346(+) (vraR) [Streptomyces sp. NBC_00343]
MTIRVLLADDQTLIRAGFRVLIDGAPDLEVVGEATTGREAVELAGSTRADVILMDIRMPDLDGIEATRLITADEDLAGVR
VLILTTFELDENVLRALHAGASGFLSKSVEPADLQEAVRVVARGEALLSPKATRGLIARFLSQPNPGPLPSPVQLDALTE
REREIMALVAAGLSNDEIGERLYVSPLTAKTHINRAMMKLGARDRAQLVVLAYRSGLVSPGDLPVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=651055 OHA62_RS45060 WP_328685915.1 10060666..10061346(+) (vraR) [Streptomyces sp. NBC_00343]
GTGACGATCAGAGTGCTGCTCGCCGACGACCAGACACTCATCCGGGCCGGCTTCCGGGTCCTCATCGACGGCGCGCCGGA
CCTGGAGGTGGTGGGCGAGGCGACGACCGGTCGCGAGGCGGTCGAACTCGCCGGCAGCACCCGCGCCGACGTGATCCTCA
TGGACATACGGATGCCGGACCTCGACGGCATCGAGGCGACCCGGCTGATCACCGCCGACGAAGACCTCGCCGGGGTACGG
GTGTTGATCCTCACCACCTTCGAACTCGACGAGAACGTCCTGCGCGCGCTGCACGCCGGCGCGAGCGGATTCCTCAGCAA
GAGCGTCGAACCGGCCGACCTCCAGGAAGCCGTGCGGGTCGTCGCCCGAGGGGAGGCCCTGCTGTCGCCCAAGGCCACGC
GCGGCCTCATCGCCCGCTTCCTCTCCCAGCCGAACCCGGGCCCACTGCCCAGCCCGGTCCAGCTCGACGCACTCACCGAG
CGGGAGCGCGAGATCATGGCCCTGGTCGCCGCCGGGCTCTCCAACGACGAGATAGGGGAGCGGTTGTACGTCTCTCCCCT
GACCGCCAAGACCCACATCAACCGGGCGATGATGAAACTGGGCGCCCGCGACCGCGCCCAACTGGTCGTCCTCGCCTACC
GGAGCGGCTTGGTGAGCCCGGGCGACCTTCCTGTCGTGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-119)

Bacterial regulatory proteins, luxR family (GerE)

(157-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.615

96.46

0.363