Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   OHA62_RS37090 Genome accession   NZ_CP107998
Coordinates   8271413..8272768 (+) Length   451 a.a.
NCBI ID   WP_328684509.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00343     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8266413..8277768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA62_RS37065 (OHA62_37040) vraR 8267001..8267624 (-) 624 WP_328684505.1 response regulator transcription factor Regulator
  OHA62_RS37070 (OHA62_37045) - 8267621..8268856 (-) 1236 WP_328684506.1 sensor histidine kinase -
  OHA62_RS37075 (OHA62_37050) - 8268853..8269704 (-) 852 WP_328684507.1 ABC transporter permease -
  OHA62_RS37080 (OHA62_37055) - 8269701..8270567 (-) 867 WP_328684508.1 ABC transporter ATP-binding protein -
  OHA62_RS37085 (OHA62_37060) - 8270710..8271366 (+) 657 WP_033282274.1 vitamin K epoxide reductase family protein -
  OHA62_RS37090 (OHA62_37065) rarA 8271413..8272768 (+) 1356 WP_328684509.1 replication-associated recombination protein A Machinery gene
  OHA62_RS37095 (OHA62_37070) rpsD 8273069..8273683 (+) 615 WP_019066381.1 30S ribosomal protein S4 -
  OHA62_RS37100 (OHA62_37075) - 8273714..8275885 (-) 2172 WP_328684510.1 AAA family ATPase -
  OHA62_RS37105 (OHA62_37080) - 8276038..8276484 (+) 447 WP_063739143.1 DUF948 domain-containing protein -
  OHA62_RS37110 (OHA62_37085) - 8276492..8276851 (+) 360 WP_328684511.1 hypothetical protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48525.06 Da        Isoelectric Point: 6.5139

>NTDB_id=651038 OHA62_RS37090 WP_328684509.1 8271413..8272768(+) (rarA) [Streptomyces sp. NBC_00343]
MEPDLFTAAAEERQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGAGGPAGPSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIDGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWITLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRALIRRALSDERGLKDAVTLPEDSENHLLRIAGGDARRALTALEAAAGAALDKGEPG
ITLQTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPNAL
PIAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATTAIGAAMEDVRKGHAGPVPMHLRDGHYKGAAKLGHAQGYVY
PHDLPEGIAEQQYAPEELKDRTYYEPTRHGAEARYADAVEWTRKRLGRKRS

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=651038 OHA62_RS37090 WP_328684509.1 8271413..8272768(+) (rarA) [Streptomyces sp. NBC_00343]
GTGGAGCCCGACCTTTTCACCGCCGCAGCCGAAGAACGCCAGGAGAAGGACCCGTCCAGCAGTCCCCTGGCGGTACGGAT
GCGCCCGCGCACCCTCGACGAGGTCGTGGGCCAGCAGCACCTGCTGAAGCCGGGCTCACCCCTGCGCAGACTGGTCGGCG
AGGGGGCGGGCGGCCCGGCCGGACCCTCCTCGGTGATCCTCTGGGGCCCGCCCGGCACCGGAAAGACGACCCTCGCGTAC
GTCGTCTCGAAGGCGACCAACAAGCGGTTCGTGGAGTTGTCCGCGATCACCGCAGGGGTCAAGGAGGTCCGCGCCGTCAT
CGACGGCGCCCGCCGCGCCACCGGGGGCTTCGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTGCTCCCGGCCGTCGAGAACCGCTGGATCACCCTGATCGCGGCGACCACGGAGAACCCGTACTTC
TCGGTGATCTCCCCGCTCCTGTCCCGCTCCCTCCTCCTCACCCTCGAACCCCTCACGGACGACGACCTGCGCGCCCTGAT
CCGCCGCGCGCTGTCCGACGAGCGCGGCCTGAAGGACGCGGTCACCCTCCCCGAGGACAGCGAGAACCACCTGCTGCGCA
TCGCCGGCGGCGACGCCCGCCGCGCGCTCACCGCCCTGGAGGCCGCCGCCGGAGCCGCCCTCGACAAGGGCGAGCCGGGC
ATCACCCTGCAGACCCTGGAGGAGACGGTCGACCGGGCCGCCGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGT
GGCCAGCGCCCTCATCAAGTCGATTCGCGGCTCCGACGTCGACGCGGCCCTGCACTACCTGGCCCGCATGATCGAGGCCG
GCGAGGACCCCCGCTTCATCGCCCGCCGCCTGATGATCTCCGCGAGCGAGGACATCGGCCTCGCCGATCCCAACGCGCTG
CCGATCGCGGTCGCCGCCGCCCAGGCCGTGGCGATGATCGGTTTCCCGGAGGCCGCGCTCACCCTCAGCCACGCCACCAT
CGCCCTCGCCCTCGCGCCCAAGTCGAACGCGGCGACCACGGCGATCGGCGCCGCCATGGAGGACGTACGCAAGGGGCACG
CCGGCCCGGTGCCGATGCACCTGCGGGACGGGCACTACAAGGGCGCGGCCAAGCTCGGGCACGCGCAGGGGTACGTCTAC
CCGCACGACCTGCCCGAGGGCATCGCCGAGCAGCAGTACGCCCCGGAGGAGCTGAAGGACCGTACGTACTACGAACCGAC
CCGGCACGGCGCCGAGGCCCGGTACGCGGACGCGGTCGAGTGGACCAGGAAACGCCTCGGTCGAAAGCGGTCCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

AAA C-terminal domain (AAA_assoc_2)

(200-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

43.88

96.009

0.421