Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   OHA62_RS31110 Genome accession   NZ_CP107998
Coordinates   6963081..6964814 (-) Length   577 a.a.
NCBI ID   WP_328683518.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00343     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 6958081..6969814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA62_RS31100 (OHA62_31070) - 6959716..6961026 (+) 1311 WP_328683516.1 RNA polymerase sigma factor -
  OHA62_RS31105 (OHA62_31075) rcrQ 6961153..6963081 (-) 1929 WP_328683517.1 ABC transporter ATP-binding protein Regulator
  OHA62_RS31110 (OHA62_31080) rcrP 6963081..6964814 (-) 1734 WP_328683518.1 ABC transporter ATP-binding protein Regulator
  OHA62_RS31115 (OHA62_31085) - 6964978..6966435 (-) 1458 WP_328683519.1 FGGY family carbohydrate kinase -
  OHA62_RS31120 (OHA62_31090) - 6966609..6966914 (-) 306 WP_328683520.1 YtxH domain-containing protein -

Sequence


Protein


Download         Length: 577 a.a.        Molecular weight: 62687.97 Da        Isoelectric Point: 5.7461

>NTDB_id=651027 OHA62_RS31110 WP_328683518.1 6963081..6964814(-) (rcrP) [Streptomyces sp. NBC_00343]
MLIRLLRTYLRPYRKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVVCNTGAVYYGA
RTAAAVGRDIRGAIFDKVQSFSAREVGQFGAPSLITRTTNDVQQVQMLTLMTFTLLVSAPIMCVGGIILALGLDVPLSGV
LIAVVPTLTICVTLIVRRLRPLFRAMQVRLDAVNRVLREQITGNRVIRAFVRDEYEKDRFRKANSDLTEMQLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIASGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVP
PVAPVFELRRHGHLEVRGVGFCYPGAEEPVLRSIDLVARPGETTAVIGSTGSGKSTLLSLVPRLVDATDGEVLVDGVDVS
TIDPVLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGVGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=651027 OHA62_RS31110 WP_328683518.1 6963081..6964814(-) (rcrP) [Streptomyces sp. NBC_00343]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACCCTGAACGCGCACATCATCGACAACGGTGTGGTGAAGGGGGACACCGGATACA
TCCTGTCGTTCGGCGCCCTGATGATCGGGATCTCGCTGGTCCAGGTCGTGTGCAACACCGGTGCCGTCTACTACGGCGCG
CGCACCGCCGCGGCCGTCGGCCGGGACATCCGGGGTGCCATCTTCGACAAGGTGCAGTCGTTCTCGGCCCGCGAGGTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGGACGACCAATGACGTCCAGCAGGTCCAGATGCTGACCCTGATGACGTTCA
CCCTGCTCGTGTCGGCGCCGATCATGTGCGTCGGCGGGATCATCCTGGCGCTCGGTCTGGACGTGCCGCTGTCCGGGGTG
CTGATCGCGGTGGTGCCGACGCTGACGATCTGCGTGACGCTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGGGCGATGCA
GGTGCGTCTCGACGCGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATTCGCGCCTTCGTCCGGGACG
AGTACGAGAAGGACCGGTTCCGCAAGGCCAACAGCGATCTCACCGAGATGCAGCTGAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCAGTGGTCATGACCACGGTGAACCTGTCGTCCATCGCCGTCGTGTGGTTCGGCGCGCATCGCATCGCGAGCGG
CGGCATGCAGATCGGCGATCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCGAGGAGGTCCTCGACACGGAGAGCAGTGTCGTGCCG
CCGGTGGCCCCCGTCTTCGAGCTGCGCCGGCACGGACATCTGGAGGTCCGCGGGGTCGGCTTCTGTTACCCGGGTGCCGA
GGAACCCGTGCTGAGGTCCATCGACCTGGTGGCCCGCCCGGGCGAGACGACGGCCGTGATCGGCTCGACCGGCAGCGGAA
AGTCCACCCTTCTGAGTCTGGTCCCGCGGCTGGTTGACGCGACCGACGGCGAGGTCCTCGTCGACGGGGTCGACGTCTCG
ACCATCGACCCGGTGCTGCTCGCCAAGACGGTCGGCCTGGTCCCGCAGAAGCCGTACCTCTTCGCGGGCACGGTCGCGAC
CAACCTTCGCTACGGCAATCCCGACGCGACCGACGAGGAGTTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCGAGGGGCTGGAGAACGGGCTGGACTCCCCCATCGCGCAGGGCGGCACGAACGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCGCGCACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTCTCGCAGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGGCGACCATCA
GGGACGCCGACCGGATCGTCGTACTCGACGAGGGGCGGGTCGTGGGGGTGGGGCGCCATCACGAGTTGATGGCGGACAAC
GAGACGTATCGGGAGATCGTGCTCTCCCAGTTGACGGAAGCGGAGGCTGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.243

100

0.395