Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHA62_RS31105 Genome accession   NZ_CP107998
Coordinates   6961153..6963081 (-) Length   642 a.a.
NCBI ID   WP_328683517.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00343     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6956153..6968081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA62_RS31090 (OHA62_31060) - 6956417..6957682 (+) 1266 WP_328683514.1 FAD-dependent oxidoreductase -
  OHA62_RS31095 (OHA62_31065) dnaG 6957730..6959634 (+) 1905 WP_328683515.1 DNA primase -
  OHA62_RS31100 (OHA62_31070) - 6959716..6961026 (+) 1311 WP_328683516.1 RNA polymerase sigma factor -
  OHA62_RS31105 (OHA62_31075) rcrQ 6961153..6963081 (-) 1929 WP_328683517.1 ABC transporter ATP-binding protein Regulator
  OHA62_RS31110 (OHA62_31080) rcrP 6963081..6964814 (-) 1734 WP_328683518.1 ABC transporter ATP-binding protein Regulator
  OHA62_RS31115 (OHA62_31085) - 6964978..6966435 (-) 1458 WP_328683519.1 FGGY family carbohydrate kinase -
  OHA62_RS31120 (OHA62_31090) - 6966609..6966914 (-) 306 WP_328683520.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69578.14 Da        Isoelectric Point: 6.3635

>NTDB_id=651026 OHA62_RS31105 WP_328683517.1 6961153..6963081(-) (rcrQ) [Streptomyces sp. NBC_00343]
MAGPMGRMMAGTGPDARSMDFKESGKRLIGQFRPERLTIGLLLVCVVISVGLNVVGPKILGSATDLVFAGIIGRQMPAGT
TKAQALQAMRDRGQGSVADMLKSTDFTPGKGIDFTSVGHVLLLAVGTFMVAGLLMAAATRMVNRAVNRTMFRLRESVQTK
MSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPLSFLVATRIGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQDESAQLFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQKPDPMPSERPEELRGLVALE
HVSFRYDPDKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIARMSRDELRSGIGMVLQDT
WLFGGSIADNIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPTILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHADLLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=651026 OHA62_RS31105 WP_328683517.1 6961153..6963081(-) (rcrQ) [Streptomyces sp. NBC_00343]
ATGGCCGGGCCCATGGGGCGGATGATGGCCGGGACGGGCCCCGACGCCCGTTCGATGGACTTCAAGGAGTCCGGCAAACG
GCTGATCGGCCAGTTCAGGCCGGAGCGGCTGACCATCGGCCTGCTGCTGGTGTGTGTGGTGATCAGTGTCGGGCTGAACG
TGGTGGGGCCGAAGATCCTCGGCAGCGCCACCGACCTGGTCTTCGCGGGCATCATCGGGCGGCAGATGCCGGCCGGGACG
ACCAAGGCGCAGGCCCTCCAGGCGATGCGCGACCGGGGCCAGGGTTCGGTCGCGGACATGCTCAAGAGCACGGACTTCAC
CCCGGGCAAGGGCATCGACTTCACCTCGGTGGGGCATGTGCTGCTGCTCGCGGTGGGCACGTTCATGGTGGCCGGGCTGC
TGATGGCGGCGGCGACCCGGATGGTCAACCGGGCGGTCAACCGGACCATGTTCCGGCTGCGCGAGAGCGTGCAGACGAAG
ATGTCGCGCCTCCCCCTGTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTCCTCTCCCGCGCGACCAACGACATCGACAA
CATCGGCCAGACCCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACGATCATCGGCGTCCTCGCGATGATGT
TCTGGGTGTCCTGGCTGCTCGCCCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCCTCGTCGCCACCCGTATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCGACGGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGCCGCCAGGACGAGTCGGCGCAGCTGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCGG
GCTTCAAGGCGCAGTTCAACAGCGGTGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTCAACTACGTGCTGGTGGCC
GTGGTCGGCGGCCTGCGCGTCGCCTCGGGCTCCCTGTCCATCGGTGACGTACAGGCCTTCGTGCAGTACTCGCGCCAGTT
CTCGATGCCGCTGACACAGGTCGCGTCGATGGCGAACCTGGTCCAGTCCGGCGTCGCCTCCGCCGAGCGGATCTTCGAAC
TCCTCGACGCCGAGGAGCAGAAGCCCGACCCGATGCCGAGCGAACGCCCGGAGGAACTCCGCGGCCTGGTCGCCCTGGAG
CACGTCTCCTTCCGCTACGACCCCGACAAGCCGCTCATCGAGGACCTCTCGCTGACGGTGGAACCGGGCCACACGGTCGC
GATCGTCGGCCCGACCGGCGCCGGCAAGACCACCCTCGTCAACCTCCTCATGCGGTTCTACGAGGTCTCCGGCGGGCGTA
TCACCCTCGACGGCGTCGACATCGCGCGGATGTCCCGGGACGAACTCCGGTCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCTCCATCGCGGACAACATCGCGTACGGGGCCTCTCGCGAGGTCACCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCGGCGCACGCCGACCGGTTCGTCCGTACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCACGG
GGGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGACGATCCTGGTCCTCGACGAG
GCGACGTCTTCAGTCGACACCCGCACGGAGGTGTTGATCCAGAAGGCGATGGCCAAACTCGCCCACGGGCGTACGTCGTT
CGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACACGATCCTGGTCATGGAGAACGGCTCGATCGTCGAACAGG
GCGCGCATGCGGATCTGTTGGCGGCGGACGGGGCGTATGCGCGCCTGTACAAGGCGCAGTTCGCCCAGGCGGTGGCGGAG
GTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.129

96.262

0.386