Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA62_RS16005 Genome accession   NZ_CP107998
Coordinates   3752191..3752805 (-) Length   204 a.a.
NCBI ID   WP_328679300.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00343     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3747191..3757805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA62_RS15980 (OHA62_15975) - 3747899..3748351 (+) 453 WP_266861847.1 ATP-binding protein -
  OHA62_RS15985 (OHA62_15980) - 3748504..3749598 (-) 1095 WP_328679292.1 bifunctional succinyldiaminopimelate transaminase/glutamate-prephenate aminotransferase -
  OHA62_RS15990 (OHA62_15985) fdxA 3749744..3750064 (-) 321 WP_019058397.1 ferredoxin -
  OHA62_RS15995 (OHA62_15990) - 3750205..3751215 (+) 1011 WP_328679298.1 GNAT family N-acetyltransferase -
  OHA62_RS16000 (OHA62_15995) - 3751239..3752090 (+) 852 WP_328686353.1 transglutaminase-like domain-containing protein -
  OHA62_RS16005 (OHA62_16000) vraR 3752191..3752805 (-) 615 WP_328679300.1 response regulator transcription factor Regulator
  OHA62_RS16010 (OHA62_16005) - 3752802..3754007 (-) 1206 WP_328686354.1 sensor histidine kinase -
  OHA62_RS16015 (OHA62_16010) - 3754013..3754753 (-) 741 WP_328679302.1 ABC transporter permease -
  OHA62_RS16020 (OHA62_16015) - 3754750..3755676 (-) 927 WP_328679304.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21606.86 Da        Isoelectric Point: 5.1224

>NTDB_id=650990 OHA62_RS16005 WP_328679300.1 3752191..3752805(-) (vraR) [Streptomyces sp. NBC_00343]
MSRTIKVLLAEDQSMVREALAALLGLEDDIEVVAQVARGDEVLASAQQHAVDVALLDIEMPGCTGIEAAAQLHKALPEVK
LVVLTTFGRPGYLRSAMEAGADAFLVKDAPAAQLAEAVRKVLAGERVIDPTLAAAALAEGANPLTDREREVLRAAADGST
NAELAKALHLSQGTVRNYLSTAIQKLAVRNRAEAVRIAREKGWL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=650990 OHA62_RS16005 WP_328679300.1 3752191..3752805(-) (vraR) [Streptomyces sp. NBC_00343]
ATGAGCCGTACGATCAAGGTCCTCCTCGCCGAGGACCAGTCGATGGTCCGCGAGGCACTGGCCGCACTGCTCGGCCTGGA
GGACGACATCGAGGTCGTCGCCCAAGTCGCCCGCGGCGACGAGGTGTTGGCGTCGGCACAACAGCATGCCGTGGACGTGG
CCCTCCTCGACATCGAGATGCCGGGCTGCACGGGCATCGAGGCGGCGGCCCAACTCCACAAGGCCCTCCCCGAGGTGAAA
CTGGTCGTCCTCACGACCTTCGGCCGCCCCGGCTACCTCCGCAGCGCGATGGAAGCGGGGGCCGACGCCTTCCTGGTGAA
GGACGCCCCCGCGGCCCAACTGGCCGAAGCGGTACGGAAGGTGCTCGCCGGAGAGCGGGTCATCGACCCCACCTTGGCGG
CAGCGGCCCTGGCGGAGGGAGCCAACCCGCTGACCGACCGCGAGCGCGAGGTGCTGCGGGCGGCGGCGGACGGCTCGACG
AACGCGGAGTTGGCCAAGGCCCTTCATCTGTCCCAGGGCACGGTCCGCAACTACCTGTCGACGGCGATCCAGAAGCTGGC
GGTGAGGAATCGGGCGGAGGCGGTAAGGATCGCAAGGGAAAAGGGCTGGCTTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-119)

Bacterial regulatory proteins, luxR family (GerE)

(143-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.232

100

0.368