Detailed information NTG0065096

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: H7R22_RS23950
• Genome accession: NZ_AP022003
• Coordinates: 4985367..4986392 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain WP3-W18-ESBL-08
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4980367..4991392

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7R22_RS23940 (WP3W18E08_46380)	rpmE	4982598..4982810 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
H7R22_RS23945 (WP3W18E08_46390)	priA	4983013..4985211 (+)	2199	WP_001550368.1	primosomal protein N'	Machinery gene
H7R22_RS23950 (WP3W18E08_46400)	cytR	4985367..4986392 (+)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
H7R22_RS23955 (WP3W18E08_46410)	ftsN	4986484..4987443 (+)	960	WP_000068834.1	cell division protein FtsN	-
H7R22_RS23960 (WP3W18E08_46420)	hslV	4987536..4988066 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
H7R22_RS23965 (WP3W18E08_46430)	hslU	4988076..4989407 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
H7R22_RS23970 (WP3W18E08_46440)	menA	4989474..4990400 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
H7R22_RS23975 (WP3W18E08_46450)	rraA	4990493..4990978 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
H7R22_RS23980 (WP3W18E08_46460)	zapB	4991063..4991308 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=65096 H7R22_RS23950 WP_000644908.1 4985367..4986392(+) (cytR) [Escherichia coli strain WP3-W18-ESBL-08]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=65096 H7R22_RS23950 WP_000644908.1 4985367..4986392(+) (cytR) [Escherichia coli strain WP3-W18-ESBL-08]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625