Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   OHS16_RS26860 Genome accession   NZ_CP107996
Coordinates   5922465..5923832 (+) Length   455 a.a.
NCBI ID   WP_328539823.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00344     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5917465..5928832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS16_RS26835 (OHS16_26830) vraR 5918121..5918741 (-) 621 WP_328539818.1 response regulator transcription factor Regulator
  OHS16_RS26840 (OHS16_26835) - 5918738..5919970 (-) 1233 WP_328539819.1 sensor histidine kinase -
  OHS16_RS26845 (OHS16_26840) - 5919928..5920779 (-) 852 WP_328539820.1 ABC transporter permease -
  OHS16_RS26850 (OHS16_26845) - 5920776..5921630 (-) 855 WP_328539821.1 ABC transporter ATP-binding protein -
  OHS16_RS26855 (OHS16_26850) - 5921769..5922389 (+) 621 WP_328539822.1 vitamin K epoxide reductase family protein -
  OHS16_RS26860 (OHS16_26855) rarA 5922465..5923832 (+) 1368 WP_328539823.1 replication-associated recombination protein A Machinery gene
  OHS16_RS26865 (OHS16_26860) - 5923842..5924528 (-) 687 WP_328540998.1 DUF2470 domain-containing protein -
  OHS16_RS26870 (OHS16_26865) rpsD 5924715..5925329 (+) 615 WP_328540999.1 30S ribosomal protein S4 -
  OHS16_RS26875 (OHS16_26870) - 5925317..5927512 (-) 2196 WP_328539824.1 AAA family ATPase -
  OHS16_RS26880 (OHS16_26875) - 5927672..5928100 (+) 429 WP_328539825.1 DUF948 domain-containing protein -
  OHS16_RS26885 (OHS16_26880) - 5928108..5928464 (+) 357 WP_328539826.1 DUF6167 family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48452.85 Da        Isoelectric Point: 6.1492

>NTDB_id=650956 OHS16_RS26860 WP_328539823.1 5922465..5923832(+) (rarA) [Streptomyces sp. NBC_00344]
MEPDLFTAAAEERQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKQGSPLRRLVGEAGGGPAGPSSVLLWGPPGIGKTTLAY
VVSQATQKRFVELSAITAGVKEVRAVIDGARRASGGYGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SIISPLLSRSLLLTLESLTDDDLRALLRRALTEERGLGGAVTLQQDAEAHLLRISGGDARRALTALEAAAGAAMAKSEPE
ISLETVEETVDRAAVTYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPAAL
PTAVAAAQAVALIGFPEAALTLSHATIALALAPKSNTATMAISAARADVRDGLVGPVPAHLRDGHYKGAAKLGHAQGYVY
PHDVPGAIAAQQYAPDAVHGKRYYEPTRYGAEARYADVVEKVRERLAGEGAEGRR

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=650956 OHS16_RS26860 WP_328539823.1 5922465..5923832(+) (rarA) [Streptomyces sp. NBC_00344]
GTGGAACCCGATCTGTTCACCGCCGCAGCCGAAGAGCGCCAGGAGAAGGACCCGTCCAGCAGCCCCCTTGCCGTACGGAT
GCGTCCGCGCACCCTCGACGAGGTGGTCGGTCAGCAGCATCTGCTGAAACAGGGCTCGCCGCTGCGCAGGCTGGTCGGTG
AGGCCGGGGGTGGTCCCGCGGGGCCGTCGTCGGTGCTGCTCTGGGGGCCGCCCGGCATCGGCAAGACGACGCTCGCCTAC
GTCGTGAGCCAGGCGACGCAGAAGCGTTTCGTCGAGCTCTCGGCCATCACGGCGGGGGTCAAGGAGGTGCGGGCCGTCAT
CGACGGTGCCCGTCGCGCCTCGGGCGGATACGGCAAGGAGACGGTCCTTTTCCTGGACGAGATCCACCGATTCAGCAAGG
CGCAGCAGGATTCGCTGCTGCCCGCGGTGGAGAACCGCTGGGTCACCCTCATCGCCGCGACCACCGAGAACCCGTACTTC
TCGATCATCTCCCCGCTGCTCTCGCGCTCCTTGCTGCTCACCCTGGAATCGCTCACCGACGACGATCTCCGGGCGCTGCT
GCGCCGGGCGCTGACCGAGGAGCGCGGCCTCGGCGGCGCGGTCACCCTGCAACAGGATGCCGAGGCGCATCTGCTGCGGA
TCTCCGGCGGTGACGCGCGCCGCGCGCTCACCGCGCTCGAAGCCGCGGCCGGGGCCGCGATGGCCAAGTCCGAGCCGGAG
ATCAGCCTGGAGACCGTGGAGGAGACCGTCGACCGCGCGGCGGTGACGTACGACCGGGACGGCGATCAGCACTACGACGT
GGCCAGCGCCCTGATCAAGTCGATCCGTGGCTCGGACGTGGATGCCGCACTCCACTATCTGGCTCGCATGATCGAGGCGG
GGGAGGATCCGAGGTTCATCGCCCGCCGGCTGATGATCTCGGCGAGCGAGGACATCGGGCTGGCCGACCCGGCCGCTCTT
CCCACCGCCGTCGCCGCCGCCCAGGCGGTGGCACTGATCGGCTTCCCCGAGGCCGCGCTCACCCTGAGCCACGCCACCAT
CGCGCTGGCCCTCGCACCCAAGTCGAACACCGCCACCATGGCGATCTCCGCCGCCCGGGCGGATGTGCGCGACGGACTGG
TGGGCCCGGTCCCCGCGCATCTGCGCGACGGCCATTACAAGGGCGCGGCCAAGCTCGGTCACGCCCAGGGCTACGTCTAT
CCGCACGATGTTCCGGGCGCGATCGCCGCCCAGCAGTACGCGCCGGACGCCGTGCACGGCAAGCGTTACTACGAGCCCAC
GAGGTACGGCGCCGAGGCGCGCTACGCGGATGTCGTGGAGAAGGTGCGCGAGCGGCTGGCGGGCGAGGGCGCCGAAGGGC
GCCGGTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-442)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

AAA C-terminal domain (AAA_assoc_2)

(199-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.755

94.286

0.422