Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   L3V45_RS07960 Genome accession   NZ_CP091421
Coordinates   1573790..1574689 (+) Length   299 a.a.
NCBI ID   WP_015388238.1    Uniprot ID   A0A6A8LH26
Organism   Bacillus sp. R45     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1568790..1579689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V45_RS07940 (L3V45_07940) - 1569481..1571184 (+) 1704 WP_236837338.1 glycosyl transferase -
  L3V45_RS07945 (L3V45_07945) - 1571181..1571462 (+) 282 WP_003154284.1 FlhB-like flagellar biosynthesis protein -
  L3V45_RS07950 (L3V45_07950) sucC 1571637..1572794 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  L3V45_RS07955 (L3V45_07955) sucD 1572823..1573725 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  L3V45_RS07960 (L3V45_07960) dprA 1573790..1574689 (+) 900 WP_015388238.1 DNA-processing protein DprA Machinery gene
  L3V45_RS07965 (L3V45_07965) topA 1574871..1576946 (+) 2076 WP_003154274.1 type I DNA topoisomerase -
  L3V45_RS07970 (L3V45_07970) trmFO 1577011..1578318 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  L3V45_RS07975 (L3V45_07975) xerC 1578388..1579305 (+) 918 WP_043867088.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32820.92 Da        Isoelectric Point: 7.8285

>NTDB_id=650934 L3V45_RS07960 WP_015388238.1 1573790..1574689(+) (dprA) [Bacillus sp. R45]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=650934 L3V45_RS07960 WP_015388238.1 1573790..1574689(+) (dprA) [Bacillus sp. R45]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
ACCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGTTTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8LH26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365