Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHS16_RS13330 Genome accession   NZ_CP107996
Coordinates   2944696..2946090 (+) Length   464 a.a.
NCBI ID   WP_328537403.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00344     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2939696..2951090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS16_RS13310 (OHS16_13310) - 2940127..2940945 (-) 819 WP_328537399.1 sugar phosphate isomerase/epimerase -
  OHS16_RS13315 (OHS16_13315) - 2940968..2941900 (-) 933 WP_328537400.1 Ppx/GppA phosphatase family protein -
  OHS16_RS13320 (OHS16_13320) - 2941978..2942778 (+) 801 WP_328537401.1 hypothetical protein -
  OHS16_RS13325 (OHS16_13325) - 2942791..2944524 (-) 1734 WP_328537402.1 hypothetical protein -
  OHS16_RS13330 (OHS16_13330) radA/sms 2944696..2946090 (+) 1395 WP_328537403.1 DNA repair protein RadA Machinery gene
  OHS16_RS13335 (OHS16_13335) disA 2946147..2947271 (+) 1125 WP_328537404.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHS16_RS13340 (OHS16_13340) - 2947360..2948193 (-) 834 WP_328540829.1 hypothetical protein -
  OHS16_RS13345 (OHS16_13345) - 2948377..2948985 (+) 609 WP_328537405.1 phosphatase PAP2 family protein -
  OHS16_RS13350 (OHS16_13350) - 2949002..2949916 (+) 915 WP_328537406.1 A/G-specific adenine glycosylase -
  OHS16_RS13355 (OHS16_13355) - 2950091..2950645 (+) 555 WP_328537407.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 48883.01 Da        Isoelectric Point: 7.2161

>NTDB_id=650922 OHS16_RS13330 WP_328537403.1 2944696..2946090(+) (radA/sms) [Streptomyces sp. NBC_00344]
MATRAKSVKPSYRCTECGWTTAKWLGRCPECQTWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRTATARPTGVDELD
RVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATEDHRTLYVTAEESASQVRLRADRIHAINDHLFLAAETDLSAVLG
HLDAVKPSLLVLDSVQTVASPELDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSFE
GDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDTQIP
SPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYTATVGGVKLTEPAADLAVALALASAASDVPLPKNLVAIGEVGLA
GEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPAGMNVIEVADMGEALRVLPRRSRTQAPREE

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=650922 OHS16_RS13330 WP_328537403.1 2944696..2946090(+) (radA/sms) [Streptomyces sp. NBC_00344]
ATGGCCACCCGTGCGAAGTCCGTCAAACCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACAGCTAAGTGGCTCGGCCG
CTGCCCCGAGTGCCAGACCTGGGGCACGGTGGAGGAGTTCGGCGGCGCGCCCGCCGTGCGGACCACCGCGGCCGGCCGGG
TCAGCACCGCGGCCCTGCCGATCGGCCAGGTCGACAGCCGGACGGCCACCGCCCGTCCGACCGGCGTGGACGAGCTCGAC
CGGGTGCTCGGCGGCGGTCTGGTGCCCGGCGCTGTGGTGCTGCTCGCGGGTGAGCCCGGCGTCGGGAAGTCCACCCTGCT
GCTCGATGTCGCGGCGAAGGCAGCGACCGAGGACCACCGCACGCTCTATGTGACGGCCGAGGAGTCGGCGAGTCAGGTGA
GACTCCGGGCGGACCGTATCCATGCGATCAACGACCATCTGTTCCTGGCCGCCGAGACCGACCTCTCCGCGGTGCTCGGC
CATCTCGACGCCGTCAAGCCCTCGCTGCTGGTGCTGGACTCCGTACAGACGGTCGCGTCACCCGAACTCGACGGGGCCCC
CGGCGGGATGGCCCAGGTGCGCGAGGTGGCCGGTGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCCACCCTGCTGG
TCGGCCATGTGACGAAGGACGGGGCCATCGCGGGGCCCCGGCTCCTGGAGCATCTGGTGGACGTGGTGCTGTCCTTCGAG
GGTGACCGGCATGCCCGGCTCAGGCTCGTCCGCGGCGTCAAGAACCGCTACGGCGCGACCGACGAGGTCGGCTGCTTCGA
GCTTCACGACGAGGGCATCACAGGTCTCGCGGATCCGAGCGGGCTGTTCCTGACACGCCGTGACGAACCGGTTCCCGGTA
CCTGTCTGACGGTCACTCTCGAGGGAAAGCGTCCGCTGGTCGCGGAGGTCCAGGCGCTCACCGTCGACACCCAGATCCCC
TCGCCCAGGCGCACCACATCCGGTCTTGAGACCTCCCGGGTCTCGATGATGCTCGCGGTGCTCGAGCAGCGCGGCCGGAT
CAGCGCACTCGGCAAGCGCGACATCTACACCGCGACGGTCGGCGGTGTGAAGCTCACCGAACCGGCCGCCGACCTCGCGG
TCGCGCTGGCCCTGGCATCCGCGGCGAGCGACGTGCCGCTGCCGAAGAACCTGGTCGCGATCGGTGAAGTGGGCCTGGCC
GGTGAGGTCAGGAGGGTGACCGGAGTCCAGCGCAGGCTCGCCGAGGCGCACCGTCTCGGCTTCACCCACGCACTGGTCCC
GAGCGATCCGGGGAAGGTCCCCGCCGGTATGAACGTCATCGAGGTGGCCGACATGGGAGAGGCCCTGCGGGTCCTTCCGC
GCCGGTCGAGGACCCAGGCGCCCCGGGAGGAGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(12-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.556

96.983

0.422
  radA Streptococcus mitis SK321

42.605

97.629

0.416
  radA Streptococcus mitis NCTC 12261

42.605

97.629

0.416
  radA Streptococcus pneumoniae Rx1

42.667

96.983

0.414
  radA Streptococcus pneumoniae TIGR4

42.667

96.983

0.414
  radA Streptococcus pneumoniae D39

42.667

96.983

0.414
  radA Streptococcus pneumoniae R6

42.667

96.983

0.414