Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   L3V45_RS01755 Genome accession   NZ_CP091421
Coordinates   325564..326001 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus sp. R45     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 320564..331001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V45_RS01720 (L3V45_01720) - 321145..321306 (-) 162 Protein_298 hypothetical protein -
  L3V45_RS01725 (L3V45_01725) - 321423..322625 (+) 1203 WP_024084872.1 GTP-binding protein -
  L3V45_RS01730 (L3V45_01730) - 322690..323826 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  L3V45_RS01735 (L3V45_01735) - 323841..324275 (+) 435 WP_021494203.1 RDD family protein -
  L3V45_RS01740 (L3V45_01740) - 324347..324667 (+) 321 WP_015388719.1 YckD family protein -
  L3V45_RS01745 (L3V45_01745) - 324892..325103 (+) 212 Protein_303 family 1 glycosylhydrolase -
  L3V45_RS01750 (L3V45_01750) nin/comJ 325144..325542 (-) 399 WP_043866822.1 competence protein ComJ Regulator
  L3V45_RS01755 (L3V45_01755) nucA/comI 325564..326001 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  L3V45_RS01760 (L3V45_01760) hxlB 326360..326917 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  L3V45_RS01765 (L3V45_01765) hxlA 326914..327549 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  L3V45_RS01770 (L3V45_01770) - 327781..328143 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=650909 L3V45_RS01755 WP_003156588.1 325564..326001(-) (nucA/comI) [Bacillus sp. R45]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=650909 L3V45_RS01755 WP_003156588.1 325564..326001(-) (nucA/comI) [Bacillus sp. R45]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641