Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   L3V45_RS00020 Genome accession   NZ_CP091421
Coordinates   3027..4139 (+) Length   370 a.a.
NCBI ID   WP_014304178.1    Uniprot ID   -
Organism   Bacillus sp. R45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V45_RS00005 (L3V45_00005) dnaA 1..1341 (+) 1341 WP_004392913.1 chromosomal replication initiator protein DnaA -
  L3V45_RS00010 (L3V45_00010) dnaN 1525..2661 (+) 1137 WP_236837211.1 DNA polymerase III subunit beta -
  L3V45_RS00015 (L3V45_00015) rlbA 2796..3011 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  L3V45_RS00020 (L3V45_00020) recF 3027..4139 (+) 1113 WP_014304178.1 DNA replication/repair protein RecF Machinery gene
  L3V45_RS00025 (L3V45_00025) - 4157..4402 (+) 246 WP_004392908.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  L3V45_RS00030 (L3V45_00030) gyrB 4462..6378 (+) 1917 WP_004392900.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  L3V45_RS00035 (L3V45_00035) gyrA 6594..9053 (+) 2460 WP_004392898.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42428.35 Da        Isoelectric Point: 7.0882

>NTDB_id=650902 L3V45_RS00020 WP_014304178.1 3027..4139(+) (recF) [Bacillus sp. R45]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVARRLQFTAQLEKWAQPIHSGISRGIEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=650902 L3V45_RS00020 WP_014304178.1 3027..4139(+) (recF) [Bacillus sp. R45]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAGGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGAAGAT
TTCTCGATATGGAGATCGGTCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATCGA
AGCAGCCGCAAAAGTTGTCGCCAGACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGAATTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTCTGAAGCTGGCTGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.054

100

0.941