Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHS16_RS06915 Genome accession   NZ_CP107996
Coordinates   1561447..1562238 (+) Length   263 a.a.
NCBI ID   WP_328536293.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00344     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1556447..1567238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS16_RS06905 (OHS16_06905) - 1557434..1560304 (-) 2871 WP_328536291.1 vitamin B12-dependent ribonucleotide reductase -
  OHS16_RS06910 (OHS16_06910) nrdR 1560431..1560943 (-) 513 WP_328536292.1 transcriptional regulator NrdR -
  OHS16_RS06915 (OHS16_06915) dinR/lexA 1561447..1562238 (+) 792 WP_328536293.1 transcriptional repressor LexA Regulator
  OHS16_RS06920 (OHS16_06920) - 1562319..1564289 (-) 1971 WP_328536294.1 ATP-dependent DNA helicase -
  OHS16_RS06925 (OHS16_06925) - 1564430..1566124 (-) 1695 WP_328536295.1 IucA/IucC family protein -
  OHS16_RS06930 (OHS16_06930) - 1566332..1567066 (-) 735 WP_328540742.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28583.31 Da        Isoelectric Point: 6.6538

>NTDB_id=650901 OHS16_RS06915 WP_328536293.1 1561447..1562238(+) (dinR/lexA) [Streptomyces sp. NBC_00344]
MTTTADDAIITAQDRSQNRLEPVHAMNDTTDPEGSVPSRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQTTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNS
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=650901 OHS16_RS06915 WP_328536293.1 1561447..1562238(+) (dinR/lexA) [Streptomyces sp. NBC_00344]
GTGACCACGACCGCAGACGATGCCATCATCACTGCCCAGGACCGCTCCCAGAACCGACTCGAGCCGGTGCATGCGATGAA
CGACACCACGGATCCCGAGGGCTCGGTGCCCTCCCGACCTGCTCGCTCGCTGCCCGGCCGACCTCCTGGAATCCGGGCGG
ACAGTTCTGGACTGACGGATCGACAGCGACGGGTCATCGAGGTGATCAGGGACTCCGTGCAGCGTCGCGGATACCCGCCG
TCGATGCGGGAGATCGGTCAGGCGGTGGGGCTGTCGAGCACGTCGTCCGTCGCCCATCAGCTGATGGCGCTGGAGCGCAA
GGGGTTCCTTCGCCGGGACCCGCACCGTCCGCGGGCGTACGAGGTCCGAGGCTCCGACCAGCCGAGCACGCAGACCACCG
ACACCACGGGCAAGCCGGCCGCTTCCTACGTGCCGCTCGTCGGCCGGATCGCTGCGGGTGGCCCCATCCTGGCCGAGGAG
TCCGTCGAGGATGTCTTCCCCCTCCCCCGCCAGTTGGTGGGAGACGGTGAGCTCTTCGTCCTCAAGGTGGTCGGCGACTC
GATGATCGAGGCCGCCATCTGTGATGGCGACTGGGTCACCGTCCGCCGTCAGCCCGTCGCGGAGAACGGCGACATCGTGG
CAGCCATGCTGGAGGGCGAAGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGGCATGTGTGGCTGCTCCCCCACAACTCC
GCGTACCAGCCGATTCCGGGCGACGAAGCGACCATCCTCGGCAAGGTGGTGGCCGTGCTTCGACGGGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(56-119)

Peptidase S24-like (Peptidase_S24)

(145-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.608

0.373