Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS16_RS04905 Genome accession   NZ_CP107996
Coordinates   1071607..1072281 (-) Length   224 a.a.
NCBI ID   WP_328535920.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00344     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1066607..1077281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS16_RS04880 (OHS16_04875) - 1066904..1067668 (-) 765 WP_328535915.1 GntR family transcriptional regulator -
  OHS16_RS04885 (OHS16_04880) - 1067745..1068749 (+) 1005 WP_328535916.1 Gfo/Idh/MocA family oxidoreductase -
  OHS16_RS04890 (OHS16_04885) - 1068759..1069976 (-) 1218 WP_328535917.1 cytochrome P450 -
  OHS16_RS04895 (OHS16_04890) - 1069987..1070409 (-) 423 WP_328535918.1 PaaI family thioesterase -
  OHS16_RS04900 (OHS16_04895) - 1070421..1071602 (-) 1182 WP_328535919.1 cytochrome P450 -
  OHS16_RS04905 (OHS16_04900) vraR 1071607..1072281 (-) 675 WP_328535920.1 response regulator transcription factor Regulator
  OHS16_RS04910 (OHS16_04905) - 1072278..1073492 (-) 1215 WP_328535921.1 histidine kinase -
  OHS16_RS04915 (OHS16_04910) - 1073659..1074582 (-) 924 WP_328540720.1 DMT family transporter -
  OHS16_RS04920 (OHS16_04915) - 1074783..1075607 (-) 825 WP_328535922.1 AIM24 family protein -
  OHS16_RS04925 (OHS16_04920) - 1075787..1076510 (+) 724 Protein_980 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 23468.02 Da        Isoelectric Point: 6.1123

>NTDB_id=650897 OHS16_RS04905 WP_328535920.1 1071607..1072281(-) (vraR) [Streptomyces sp. NBC_00344]
MTIRLLVVDDDPLVRAGLALMLGGADGIEIVGEAADGSEVAALVADVHPDVVLMDIRMPGVDGLTATERLRSRPGAPDVI
VLTTFHADEQVVRALRAGAAGFVLKDTPPADIVTAVRRVVAGEPVLSPAVTRQLMSRVADSAPGDRTDRARARLGQLGVR
EREVAVGVGRGQSNAGIAAALYMSVPTVKTHVSRILARLGFNNRVQIALLVHDAGLLDRDTDVG

Nucleotide


Download         Length: 675 bp        

>NTDB_id=650897 OHS16_RS04905 WP_328535920.1 1071607..1072281(-) (vraR) [Streptomyces sp. NBC_00344]
ATGACCATCAGGCTGCTCGTCGTCGACGACGACCCACTCGTACGCGCCGGACTCGCCCTCATGCTCGGCGGCGCCGACGG
CATCGAGATCGTCGGTGAGGCGGCGGACGGATCCGAGGTGGCCGCACTGGTGGCCGATGTCCACCCCGATGTGGTGCTGA
TGGACATCCGGATGCCGGGCGTGGACGGGCTGACCGCCACCGAGCGGCTGCGGTCCAGGCCCGGCGCCCCCGACGTGATC
GTCCTGACCACCTTCCACGCCGACGAACAGGTCGTACGGGCGCTGCGCGCGGGGGCCGCCGGGTTCGTACTCAAGGACAC
GCCGCCCGCCGACATCGTCACCGCGGTGCGCCGGGTGGTGGCCGGTGAACCTGTGCTCTCCCCTGCGGTCACCCGGCAGT
TGATGTCGCGGGTGGCGGACTCCGCCCCCGGCGACAGGACCGATCGCGCCCGGGCGCGGCTGGGTCAACTGGGCGTTCGC
GAAAGGGAGGTGGCGGTCGGGGTCGGGCGCGGCCAGTCCAACGCGGGCATCGCGGCGGCGCTCTACATGAGCGTGCCGAC
AGTCAAGACGCATGTGTCGCGCATCCTGGCCCGTCTCGGTTTCAACAACCGTGTCCAGATCGCGCTGCTGGTGCACGATG
CGGGCCTCCTCGACCGGGACACGGACGTAGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)

Bacterial regulatory proteins, luxR family (GerE)

(159-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.156

97.321

0.362