Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHA88_RS30675 Genome accession   NZ_CP107985
Coordinates   6821760..6823493 (-) Length   577 a.a.
NCBI ID   WP_328627886.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00353     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6816760..6828493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA88_RS30665 (OHA88_30720) - 6818691..6819818 (+) 1128 WP_328627884.1 RNA polymerase sigma factor -
  OHA88_RS30670 (OHA88_30725) rcrQ 6819835..6821760 (-) 1926 WP_328627885.1 ABC transporter ATP-binding protein Regulator
  OHA88_RS30675 (OHA88_30730) rcrP 6821760..6823493 (-) 1734 WP_328627886.1 ABC transporter ATP-binding protein Regulator
  OHA88_RS30680 (OHA88_30735) - 6823664..6825109 (-) 1446 WP_328627887.1 FGGY family carbohydrate kinase -
  OHA88_RS30685 (OHA88_30740) - 6825170..6825475 (-) 306 WP_326608456.1 YtxH domain-containing protein -
  OHA88_RS30705 (OHA88_30760) - 6826836..6827027 (+) 192 WP_267005305.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62824.83 Da        Isoelectric Point: 5.3818

>NTDB_id=650869 OHA88_RS30675 WP_328627886.1 6821760..6823493(-) (rcrP) [Streptomyces sp. NBC_00353]
MLIKLLRACLGPYKKPIMLLVALQLLQTCATLYLPSLNADIIDNGVVEGDTGYILTYGGIMIAVSVAQVVCNTGAVFYGA
RTAAALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVEPVRELRAHGHLEVRAADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGHVLVDGTDVR
TLEPTLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEELEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALSQETAESTVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=650869 OHA88_RS30675 WP_328627886.1 6821760..6823493(-) (rcrP) [Streptomyces sp. NBC_00353]
GTGCTCATAAAACTCCTGCGGGCCTGTCTCGGCCCGTACAAGAAACCGATCATGCTGTTGGTGGCTCTCCAGCTGCTGCA
GACCTGCGCCACTCTCTATCTCCCCTCTCTCAACGCCGACATCATTGACAACGGTGTCGTCGAGGGGGACACCGGCTACA
TCCTGACGTACGGCGGCATCATGATCGCCGTCTCCGTCGCCCAGGTCGTCTGCAACACGGGGGCGGTCTTCTACGGTGCG
CGAACTGCGGCCGCACTGGGCCGGGATGTCCGGGCGTCGGTCTTCGACCGGGTTCAGTCGTTCTCGGCACGTGAGGTCGG
GCGCTTCGGGGCACCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CCATGATGGTCTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTTCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCATCGCGGTGAGTCTCATCGTGCGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCATTCGTCCGCGACG
GGTACGAGGAGAAGCGGTTCCGGGGCGCCAACACCGAGTTGACCGATGTGGCGCTCTCCACCGGGCGTCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGTATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGTGCCGAGCGCATCCAGGAAGTGCTGGAGACCGATTCGAGCGTGGTGCCG
CCGGTCGAGCCGGTGCGGGAGCTGCGCGCCCACGGTCATCTGGAGGTGCGGGCCGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGTTGCGGTCAGTGGATCTGGTGGCGCGGCCCGGTGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGTCTCGTACCGCGGCTGTTCGATGTGACGGACGGTCACGTACTGGTCGACGGCACGGACGTACGG
ACGCTGGAGCCTACGCTGCTGGCGAAGACGGTGAGTCTGGTTCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTGGCGAC
GAATCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGTTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGAGCTGGAGCACGGGCTGCACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAGCGACTC
GCGATCGCGAGGACGCTGGTGCAGCGACCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTATGCGACGGA
TGCCGCGCTGCGCCGGGCGCTGTCGCAGGAGACCGCCGAGTCGACCGTGGTGATCGTGGCTCAGCGCGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTCGACGAGGGCCGGGTCGTCGGCTCCGGTACCCATCACGAGCTGATGGACGGCAAT
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.44

100

0.414