Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHA88_RS30670 Genome accession   NZ_CP107985
Coordinates   6819835..6821760 (-) Length   641 a.a.
NCBI ID   WP_328627885.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00353     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6814835..6826760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA88_RS30655 (OHA88_30710) - 6815151..6816410 (+) 1260 WP_328627882.1 FAD/NAD(P)-binding oxidoreductase -
  OHA88_RS30660 (OHA88_30715) dnaG 6816561..6818465 (+) 1905 WP_328627883.1 DNA primase -
  OHA88_RS30665 (OHA88_30720) - 6818691..6819818 (+) 1128 WP_328627884.1 RNA polymerase sigma factor -
  OHA88_RS30670 (OHA88_30725) rcrQ 6819835..6821760 (-) 1926 WP_328627885.1 ABC transporter ATP-binding protein Regulator
  OHA88_RS30675 (OHA88_30730) rcrP 6821760..6823493 (-) 1734 WP_328627886.1 ABC transporter ATP-binding protein Regulator
  OHA88_RS30680 (OHA88_30735) - 6823664..6825109 (-) 1446 WP_328627887.1 FGGY family carbohydrate kinase -
  OHA88_RS30685 (OHA88_30740) - 6825170..6825475 (-) 306 WP_326608456.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69096.42 Da        Isoelectric Point: 5.2028

>NTDB_id=650868 OHA88_RS30670 WP_328627885.1 6819835..6821760(-) (rcrQ) [Streptomyces sp. NBC_00353]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFATERASLYGMLAACVLSVGLSVVGPKILGRATDLVFAGVIGRRLPEGT
TKEQAVEGLRKTNSGLADLLSGVDFVPGHGIDFGAVGDVLLTALAVYVGAGLLMLVATRLSIRIINQVVFQLREDIQTKL
ARLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLIMMFWISPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHSLVKVFGRQEESARDFAEQNDALYEASFRAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQGPDARTGGRPAELLGSVSLEK
VSFRYEPDKPLIENLSLNVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAQMSRDELRSGIGMVLQDTW
LFGGSIADNIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMEDGSIVEQGTHDELLEAQGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=650868 OHA88_RS30670 WP_328627885.1 6819835..6821760(-) (rcrQ) [Streptomyces sp. NBC_00353]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGACCGGTCCATGGACTTCAAGGGGTCCTCGAAGCG
GCTGCTGAAGCGCTTCGCGACGGAGAGGGCCTCGCTCTACGGGATGCTGGCGGCCTGCGTGCTGAGCGTCGGCCTCTCGG
TGGTGGGACCGAAGATCCTCGGCAGGGCGACCGACCTGGTGTTCGCCGGGGTCATCGGCCGGCGGCTGCCCGAGGGCACG
ACGAAGGAGCAGGCCGTCGAGGGCCTGCGCAAGACCAACAGCGGCCTGGCCGACCTGCTCTCCGGGGTCGACTTCGTCCC
CGGCCACGGCATCGACTTCGGTGCAGTGGGCGACGTACTGCTGACGGCGCTGGCGGTCTATGTCGGTGCCGGTCTGCTGA
TGCTGGTGGCCACCCGGCTGTCGATCCGGATCATCAACCAGGTCGTGTTCCAGCTGCGCGAGGACATCCAGACGAAGCTG
GCGCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCTCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTCACCATCGTCGGCGTGCTGATCATGATGTTCT
GGATCTCGCCGCTGCTGGCCCTGGTGGCGCTGGTGACGGTGCCGCTGTCGGTGGTCGTGGCGACGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGAAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCACTC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGAGGGACTTCGCCGAGCAGAACGACGCACTGTACGAGGCGAGCT
TCCGGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGATAGCCGTC
GTCGGTGGGTTGCGGGTGGCGTCGGGTGCACTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCCTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGGCCCCGACGCCCGGACCGGTGGGCGCCCGGCAGAGCTGCTCGGCAGCGTCTCGCTGGAGAAG
GTGTCGTTCCGGTACGAGCCGGACAAGCCGCTCATCGAGAATCTGTCGCTGAACGTCGAGCCGGGCCACACGGTCGCGAT
CGTCGGCCCGACCGGCGCCGGCAAGACGACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCCGGATCG
CACTCGACGGCGTCGACGTGGCGCAGATGTCGCGGGACGAGCTGCGGTCGGGGATCGGCATGGTCCTGCAGGACACCTGG
CTGTTCGGCGGGTCGATCGCGGACAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGCGGC
GAGGGCGGCCCACGCCGACCGCTTCATCCGTACCCTGCCGGACGGTTACGACACGGTGATCGACGACGAGGGCACCGGGG
TCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCC
ACGAGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGTCTCGCGCACGGCCGTACGAGCTTTGT
GATCGCGCACCGGCTCTCCACCATCCGGGATGCGGACGTCATCCTGGTGATGGAGGACGGGTCGATCGTCGAACAGGGCA
CGCACGACGAGCTGTTGGAGGCGCAGGGGGCGTACGCCCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGCCGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(413-562)

ABC transporter transmembrane region (ABC_membrane)

(51-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.033

93.916

0.376