Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OHA88_RS18955 Genome accession   NZ_CP107985
Coordinates   4208634..4209611 (-) Length   325 a.a.
NCBI ID   WP_326605596.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00353     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4203634..4214611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA88_RS18935 (OHA88_18970) mshB 4203792..4204745 (-) 954 WP_328626392.1 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase -
  OHA88_RS18940 (OHA88_18975) - 4204809..4205003 (-) 195 WP_030915260.1 hypothetical protein -
  OHA88_RS18945 (OHA88_18980) - 4205207..4207339 (+) 2133 WP_328626393.1 prolyl oligopeptidase family serine peptidase -
  OHA88_RS18950 (OHA88_18985) - 4207499..4208644 (-) 1146 WP_328626394.1 dipeptide ABC transporter ATP-binding protein -
  OHA88_RS18955 (OHA88_18990) amiE 4208634..4209611 (-) 978 WP_326605596.1 ABC transporter ATP-binding protein Regulator
  OHA88_RS18960 (OHA88_18995) - 4209625..4210599 (-) 975 WP_328626395.1 ABC transporter permease -
  OHA88_RS18965 (OHA88_19000) - 4210592..4211515 (-) 924 WP_327369668.1 ABC transporter permease -
  OHA88_RS18970 (OHA88_19005) - 4211611..4213245 (-) 1635 WP_328626396.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 35772.61 Da        Isoelectric Point: 6.5871

>NTDB_id=650841 OHA88_RS18955 WP_326605596.1 4208634..4209611(-) (amiE) [Streptomyces sp. NBC_00353]
MLLEVRDLHVEFHTRDGVAKAVNGVNYSVAEGETLAVLGESGSGKSVTAQAIMGILDMPPGKISSGEIIFKGRDLLKLKA
EERRKIRGQEMAMIFQDALSSLNPVLSVGDQLGEMFVVHRGMSRKDARTKAIELMDRVRIPAAKERVGNYPHQFSGGMRQ
RIMIAMAMALEPSLIIADEPTTALDVTVQAQVMDLLAELQRELNMGLILITHDLGVVADVADYIAVMYAGRIVESAPVHE
IYKAPAHPYTKGLLQSIPRLDQKGQELYAIKGLPPNLLHIPPGCAFNPRCPLAQDICRGEVPPLFEVAQHRESACYFWKE
TLDAR

Nucleotide


Download         Length: 978 bp        

>NTDB_id=650841 OHA88_RS18955 WP_326605596.1 4208634..4209611(-) (amiE) [Streptomyces sp. NBC_00353]
ATGTTGCTCGAAGTGCGCGATCTGCACGTGGAGTTCCACACCCGGGACGGGGTGGCCAAAGCCGTCAACGGGGTCAACTA
CTCGGTGGCCGAGGGCGAGACGCTCGCGGTCCTCGGCGAGTCCGGCTCCGGCAAGTCGGTCACCGCACAGGCGATCATGG
GCATTCTCGACATGCCGCCGGGGAAGATCAGCAGCGGCGAGATCATCTTCAAGGGCCGCGATCTGCTGAAGCTCAAGGCC
GAGGAGCGCCGGAAGATCCGCGGCCAGGAGATGGCCATGATCTTCCAGGACGCGCTGTCGTCCCTCAACCCCGTGCTCAG
CGTGGGGGACCAGCTCGGCGAGATGTTCGTCGTGCACCGGGGGATGTCCCGCAAGGACGCCCGGACGAAGGCCATCGAGC
TGATGGACCGGGTCCGCATCCCGGCCGCGAAGGAACGCGTCGGGAACTACCCGCACCAGTTCTCCGGCGGCATGCGCCAG
CGCATCATGATCGCCATGGCGATGGCGCTGGAACCCTCGCTGATCATCGCGGACGAACCCACCACCGCCCTCGATGTGAC
CGTCCAGGCCCAGGTGATGGACCTGCTCGCCGAACTCCAGCGCGAGCTCAACATGGGACTCATCCTGATCACCCACGACC
TGGGCGTGGTCGCGGACGTCGCCGACTACATCGCCGTGATGTACGCGGGCCGGATCGTGGAGTCGGCCCCCGTCCACGAG
ATCTACAAGGCCCCCGCCCACCCATACACCAAGGGCCTCCTCCAGTCGATCCCACGGCTGGACCAGAAGGGCCAGGAGCT
GTACGCGATCAAGGGGCTGCCGCCCAACCTGCTGCACATCCCGCCCGGCTGCGCCTTCAACCCGCGCTGCCCGCTGGCCC
AGGACATCTGCCGTGGTGAGGTGCCGCCGCTGTTCGAGGTGGCCCAGCACCGCGAGAGCGCCTGCTACTTCTGGAAGGAG
ACGCTCGATGCACGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.975

98.769

0.474
  amiE Streptococcus thermophilus LMG 18311

47.352

98.769

0.468
  amiE Streptococcus thermophilus LMD-9

47.352

98.769

0.468
  oppD Streptococcus mutans UA159

48.101

97.231

0.468