Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHA88_RS15365 Genome accession   NZ_CP107985
Coordinates   3377067..3377861 (+) Length   264 a.a.
NCBI ID   WP_030927140.1    Uniprot ID   A0ABV2UD45
Organism   Streptomyces sp. NBC_00353     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3372067..3382861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA88_RS15350 (OHA88_15390) - 3372254..3372790 (+) 537 WP_328625957.1 TerD family protein -
  OHA88_RS15355 (OHA88_15395) - 3372946..3375849 (-) 2904 WP_328625958.1 vitamin B12-dependent ribonucleotide reductase -
  OHA88_RS15360 (OHA88_15400) nrdR 3376010..3376522 (-) 513 WP_326606110.1 transcriptional regulator NrdR -
  OHA88_RS15365 (OHA88_15405) dinR/lexA 3377067..3377861 (+) 795 WP_030927140.1 transcriptional repressor LexA Regulator
  OHA88_RS15370 (OHA88_15410) - 3378000..3379970 (-) 1971 WP_328625959.1 ATP-dependent DNA helicase -
  OHA88_RS15375 (OHA88_15415) - 3380021..3381880 (-) 1860 WP_328625960.1 IucA/IucC family siderophore biosynthesis protein -
  OHA88_RS15380 (OHA88_15420) - 3381941..3382819 (-) 879 WP_328625961.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28665.41 Da        Isoelectric Point: 7.4241

>NTDB_id=650828 OHA88_RS15365 WP_030927140.1 3377067..3377861(+) (dinR/lexA) [Streptomyces sp. NBC_00353]
MTTTADSATITAQDRSQSRLEPVHAMNDSVRNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=650828 OHA88_RS15365 WP_030927140.1 3377067..3377861(+) (dinR/lexA) [Streptomyces sp. NBC_00353]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCAGGAACACGGAGGGGCCGGAGCCGGCGCGCCCAGCGCGCTCGCTCCCCGGCCGACCTCCAGGAATCCGAG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGCGACTCGGTGCAGCGACGGGGGTACCCA
CCCTCGATGCGGGAGATCGGTCAGGCGGTGGGGCTGTCCAGCACGTCCTCCGTCGCCCATCAACTGATGGCTCTGGAACG
CAAGGGCTTCCTCCGCCGCGACCCTCATCGCCCCCGGGCGTACGAGGTCCGCGGTTCGGACCAGCCCAGCACGCAGCCGA
CCGACACGACCGGCAAGCCCGCCGCTTCGTACGTACCGCTGGTCGGCCGGATCGCAGCCGGCGGACCGATCCTCGCCGAG
GAATCGGTCGAGGACGTGTTTCCGCTCCCCCGCCAGCTGGTCGGGGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGTGA
CTCGATGATCGAGGCGGCGATCTGTGACGGCGACTGGGTCACCGTGCGCCGTCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCCGCCATGCTCGACGGCGAGGCGACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTATGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCTGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371