Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA88_RS04110 Genome accession   NZ_CP107985
Coordinates   863600..864268 (+) Length   222 a.a.
NCBI ID   WP_030980075.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00353     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 858600..869268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA88_RS04090 (OHA88_04105) - 859505..860296 (-) 792 WP_328624256.1 hypothetical protein -
  OHA88_RS04095 (OHA88_04110) - 860499..861446 (+) 948 WP_328624257.1 ATP-binding cassette domain-containing protein -
  OHA88_RS04100 (OHA88_04115) - 861443..862282 (+) 840 WP_328624258.1 ABC transporter permease -
  OHA88_RS04105 (OHA88_04120) - 862323..863603 (+) 1281 WP_328629584.1 sensor histidine kinase -
  OHA88_RS04110 (OHA88_04125) vraR 863600..864268 (+) 669 WP_030980075.1 response regulator transcription factor Regulator
  OHA88_RS04115 (OHA88_04130) - 864380..864625 (-) 246 Protein_821 polysaccharide deacetylase family protein -
  OHA88_RS04120 (OHA88_04135) - 864932..865975 (+) 1044 WP_328624259.1 sodium-dependent transporter -
  OHA88_RS04125 (OHA88_04140) - 866146..866397 (-) 252 WP_328624260.1 hypothetical protein -
  OHA88_RS04130 (OHA88_04145) - 866563..867042 (+) 480 WP_328624261.1 Rieske (2Fe-2S) protein -
  OHA88_RS04135 - 867206..867466 (+) 261 Protein_825 transposase -
  OHA88_RS04140 (OHA88_04155) - 867653..868762 (+) 1110 WP_328624262.1 IS110 family transposase -
  OHA88_RS04145 (OHA88_04160) - 868873..869241 (-) 369 WP_328624263.1 hypothetical protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23931.39 Da        Isoelectric Point: 5.4042

>NTDB_id=650812 OHA88_RS04110 WP_030980075.1 863600..864268(+) (vraR) [Streptomyces sp. NBC_00353]
MTTVLIVDDQPLQRYGFRVLLDSISETEVVGEAAHGAEAVRKTAELRPDVVLMDVRMPGMDGIEATRRITAAGGRSRVLV
LTTFDLDEYVHAALRAGASGFLLKDARPEELLAGIRAVAVGDAVIAPALTRRLLDEYAQHVPARRSDSEEDPRLDALTER
EREILVAIGKGWTNGEIATRFVVSESTVKTHVGRVLAKIGARDRIQAVILAYDLGLAGPGAG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=650812 OHA88_RS04110 WP_030980075.1 863600..864268(+) (vraR) [Streptomyces sp. NBC_00353]
GTGACCACAGTGCTCATCGTGGACGACCAGCCGCTCCAACGCTACGGTTTCCGGGTGCTGCTCGACTCCATCTCCGAGAC
GGAGGTGGTCGGTGAGGCCGCGCACGGCGCCGAGGCCGTCCGTAAGACCGCCGAGCTGCGTCCCGACGTCGTCCTCATGG
ACGTACGCATGCCAGGTATGGACGGCATCGAGGCCACCCGCCGGATCACCGCCGCCGGCGGCCGCTCCCGCGTTCTCGTG
CTGACCACTTTCGACCTCGACGAATACGTCCACGCCGCCCTCCGGGCCGGAGCCAGCGGCTTCCTCCTCAAGGACGCGCG
CCCCGAGGAACTCCTCGCCGGCATCCGCGCCGTCGCCGTCGGCGACGCCGTCATCGCGCCGGCTCTCACCCGCCGACTCC
TGGACGAGTACGCCCAGCACGTGCCCGCTCGCCGGAGCGATTCCGAGGAGGACCCGAGACTGGATGCACTCACCGAACGC
GAGCGCGAGATCCTCGTCGCCATCGGCAAGGGGTGGACCAACGGTGAGATTGCCACCCGCTTCGTGGTGTCCGAGTCCAC
CGTCAAGACACACGTGGGCCGCGTCCTGGCCAAGATCGGTGCCCGCGATCGCATCCAGGCCGTGATCCTCGCTTATGACC
TCGGGCTCGCCGGCCCCGGTGCGGGGTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-211)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.437

95.946

0.378