Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT74_RS08725 Genome accession   NZ_CP107983
Coordinates   1906319..1906948 (+) Length   209 a.a.
NCBI ID   WP_266662296.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00354     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1901319..1911948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT74_RS08705 (OHT74_08735) - 1902253..1903056 (+) 804 WP_266662288.1 IclR family transcriptional regulator -
  OHT74_RS08710 (OHT74_08740) - 1903199..1903900 (-) 702 WP_328619921.1 ABC transporter ATP-binding protein -
  OHT74_RS08715 (OHT74_08745) - 1903897..1904985 (-) 1089 WP_266662292.1 ABC transporter permease -
  OHT74_RS08720 (OHT74_08750) - 1905120..1906319 (+) 1200 WP_328619922.1 sensor histidine kinase -
  OHT74_RS08725 (OHT74_08755) vraR 1906319..1906948 (+) 630 WP_266662296.1 response regulator transcription factor Regulator
  OHT74_RS08730 (OHT74_08760) - 1907083..1907553 (+) 471 WP_328619923.1 hypothetical protein -
  OHT74_RS08735 (OHT74_08765) - 1907659..1909146 (-) 1488 WP_266662300.1 PLP-dependent aminotransferase family protein -
  OHT74_RS08740 (OHT74_08770) - 1909391..1910005 (+) 615 WP_328619924.1 nucleotidyltransferase family protein -
  OHT74_RS08745 (OHT74_08775) aceB 1910279..1911907 (+) 1629 WP_328619925.1 malate synthase A -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 21914.24 Da        Isoelectric Point: 6.1066

>NTDB_id=650735 OHT74_RS08725 WP_266662296.1 1906319..1906948(+) (vraR) [Streptomyces sp. NBC_00354]
MTIRLLLADDHPVVRAGLRAVLDTEPDFAVVAEAATAERAVELAASEPVDVVLMDLQFGTGMHGSAATAAITARPGAPRV
LVLTTYDTDADILAAVEAGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLVADG
LSNQQISKKLFLSQATVKSHLVHIYAKLGVDSRTSAVATATSRRLIRTP

Nucleotide


Download         Length: 630 bp        

>NTDB_id=650735 OHT74_RS08725 WP_266662296.1 1906319..1906948(+) (vraR) [Streptomyces sp. NBC_00354]
ATGACGATCCGCCTGCTGCTGGCCGACGACCACCCGGTGGTCCGGGCCGGGCTGCGCGCGGTGCTGGACACCGAGCCGGA
CTTCGCGGTGGTCGCCGAGGCCGCCACCGCCGAGCGGGCGGTGGAGCTGGCCGCCTCGGAGCCGGTGGACGTGGTCCTGA
TGGACCTCCAGTTCGGCACCGGCATGCACGGCTCGGCGGCGACGGCGGCGATCACCGCCCGGCCCGGAGCCCCCAGGGTC
CTGGTCCTGACCACGTACGACACGGACGCGGACATCCTGGCGGCGGTGGAGGCGGGCGCGTCGGGCTACCTGCTGAAGGA
CGCCCCGCCGGAGGAGCTGGCGGCGGCGGTCCGCACCGCGGCGGCGGGCCAGTCGGCGCTGGCCCCGGCGGTGGCACTGC
GCCTGATGGACCGCATGCGCACGCCCGCGGAGGCGCTGACGAAGCGGGAGCTGGAGGTGCTCCAGCTGGTCGCGGACGGC
CTGTCGAACCAGCAGATCTCGAAGAAGCTCTTCCTGAGCCAGGCCACGGTCAAATCCCACCTGGTCCACATCTACGCAAA
GCTCGGCGTCGACTCCCGCACCTCAGCGGTGGCCACAGCCACATCCCGCCGCCTCATCCGCACCCCGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)

Bacterial regulatory proteins, luxR family (GerE)

(145-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.095

100

0.383