Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT74_RS06070 Genome accession   NZ_CP107983
Coordinates   1286517..1287179 (-) Length   220 a.a.
NCBI ID   WP_030832911.1    Uniprot ID   A0ABV1V3H7
Organism   Streptomyces sp. NBC_00354     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1281517..1292179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT74_RS06045 (OHT74_06060) - 1282586..1282900 (-) 315 WP_328623262.1 transcriptional regulator -
  OHT74_RS06050 (OHT74_06065) - 1282915..1283121 (-) 207 WP_328619616.1 hypothetical protein -
  OHT74_RS06055 (OHT74_06070) - 1283791..1283970 (-) 180 Protein_1207 response regulator -
  OHT74_RS06060 (OHT74_06075) - 1284497..1284664 (-) 168 Protein_1208 cation:proton antiporter -
  OHT74_RS06065 (OHT74_06080) - 1285019..1285936 (-) 918 WP_328619617.1 caspase family protein -
  OHT74_RS06070 (OHT74_06085) vraR 1286517..1287179 (-) 663 WP_030832911.1 response regulator transcription factor Regulator
  OHT74_RS06075 (OHT74_06090) - 1287154..1288326 (-) 1173 WP_328619618.1 histidine kinase -
  OHT74_RS06080 (OHT74_06095) - 1288502..1290772 (+) 2271 WP_328619619.1 MMPL family transporter -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23422.24 Da        Isoelectric Point: 5.8304

>NTDB_id=650732 OHT74_RS06070 WP_030832911.1 1286517..1287179(-) (vraR) [Streptomyces sp. NBC_00354]
MSIRVLVADDQTIIRTGLRIMLNAQPGIEVVGEAADGREAVRLARELRPDVCLFDIRMPVLDGLEATRLVAGPGVADPLA
VVVITTFDLDEYVYGALRAGARGFLLKDTGPDLLAQAVRSASGGEALIAPSVTVRLLQAFADLPAGRPVAQPVSPVTARE
EQVLLAVARGLTNTEIADALHISLSTVKTHLASLMAKLGARNRVEIAMWAYETRRILPGT

Nucleotide


Download         Length: 663 bp        

>NTDB_id=650732 OHT74_RS06070 WP_030832911.1 1286517..1287179(-) (vraR) [Streptomyces sp. NBC_00354]
GTGTCCATTCGCGTCCTCGTCGCTGACGATCAGACGATCATCCGCACCGGGTTGCGGATCATGCTGAACGCCCAGCCCGG
CATCGAGGTGGTCGGCGAGGCCGCCGACGGGCGGGAAGCGGTACGTCTGGCCCGCGAACTGCGCCCCGACGTCTGTCTGT
TCGACATCCGCATGCCCGTACTCGACGGGCTCGAGGCCACCCGGCTGGTCGCCGGCCCGGGCGTCGCCGACCCGCTGGCC
GTGGTCGTCATCACCACGTTCGACCTCGACGAGTACGTCTACGGCGCGCTGCGTGCCGGCGCCCGCGGATTCCTCCTCAA
GGACACGGGACCAGACCTTCTGGCCCAGGCCGTACGGTCGGCGTCCGGCGGTGAGGCGCTCATTGCGCCCAGCGTCACCG
TCCGTCTGCTCCAGGCATTCGCGGACCTGCCCGCCGGCCGGCCCGTGGCCCAGCCGGTCTCCCCCGTCACCGCCCGCGAG
GAGCAGGTGCTCCTCGCCGTCGCTCGCGGGCTGACCAACACCGAGATCGCCGATGCACTGCACATCAGCCTCAGCACGGT
GAAGACGCATCTGGCCAGCCTGATGGCCAAACTCGGCGCCCGCAACCGGGTCGAGATCGCGATGTGGGCCTACGAAACGC
GCCGTATCCTCCCCGGAACCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.5

98.182

0.368