Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT74_RS03470 Genome accession   NZ_CP107983
Coordinates   703331..703996 (-) Length   221 a.a.
NCBI ID   WP_266660513.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00354     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 698331..708996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT74_RS03450 (OHT74_03460) - 700582..701262 (-) 681 WP_328619265.1 hemerythrin domain-containing protein -
  OHT74_RS03455 (OHT74_03465) - 701372..702133 (-) 762 WP_328619266.1 carbonic anhydrase -
  OHT74_RS03460 (OHT74_03470) - 702303..702809 (+) 507 WP_328619267.1 GNAT family N-acetyltransferase -
  OHT74_RS03465 (OHT74_03475) - 702886..703185 (-) 300 WP_328619268.1 SHOCT domain-containing protein -
  OHT74_RS03470 (OHT74_03480) vraR 703331..703996 (-) 666 WP_266660513.1 response regulator transcription factor Regulator
  OHT74_RS03475 (OHT74_03485) - 703993..705204 (-) 1212 WP_328619269.1 sensor histidine kinase -
  OHT74_RS03480 (OHT74_03490) - 705323..706195 (-) 873 WP_266660517.1 serine hydrolase -
  OHT74_RS03485 (OHT74_03495) - 706192..707160 (-) 969 WP_328619270.1 LysR family transcriptional regulator -
  OHT74_RS03490 (OHT74_03500) - 707246..708286 (+) 1041 WP_328619271.1 PHB depolymerase family esterase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23853.60 Da        Isoelectric Point: 4.7928

>NTDB_id=650728 OHT74_RS03470 WP_266660513.1 703331..703996(-) (vraR) [Streptomyces sp. NBC_00354]
MIRVLLADDQALVRAGFRALLDAQPDIEVAGEAADGAEAVRLARELRPDVALMDIRMPELDGLAATRTITSDPGLAAVKV
VMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAVRAVVAGDALLSPGVTRRLIAEFAARSKAPEAATELDRLTERER
EVMALVGLGLSNEEIARRLVVSPLTAKTHVSRTMIKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=650728 OHT74_RS03470 WP_266660513.1 703331..703996(-) (vraR) [Streptomyces sp. NBC_00354]
GTGATCCGCGTACTGCTCGCCGACGACCAGGCGCTGGTACGGGCCGGCTTCCGCGCGCTGCTCGACGCGCAGCCGGACAT
CGAGGTGGCGGGCGAGGCTGCCGACGGGGCCGAGGCCGTGCGGTTGGCGCGCGAACTGCGCCCGGACGTCGCCCTGATGG
ACATCCGGATGCCGGAGCTCGACGGCCTGGCCGCCACCCGCACGATCACGTCGGACCCCGGACTGGCCGCGGTGAAGGTG
GTCATGCTGACCACCTTCGAGCTCGACGAGTACGTCTTCGAGGCGATCCGCTCCGGCGCGTCCGGCTTCCTGGTCAAGGA
CACCGAACCGGAGGAACTGCTGCGTGCGGTACGGGCCGTGGTCGCGGGCGACGCGCTGCTGTCACCCGGGGTGACGCGCC
GGCTGATCGCGGAGTTCGCGGCCCGGTCGAAGGCGCCAGAGGCGGCAACGGAGCTGGACCGGCTGACCGAGCGGGAGCGC
GAGGTGATGGCCCTGGTGGGGCTGGGCCTGTCCAACGAGGAGATCGCCCGCCGGCTGGTGGTGAGCCCGCTGACCGCGAA
GACGCACGTCAGCCGGACCATGATCAAGCTCGGCGCCCGGGACCGGGCCCAGCTGGTGGTGCTGGCGTACGAGTCGGGGC
TGGTCCGGCCCGGCTGGCTCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.605

97.285

0.376