Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHB28_RS31130 Genome accession   NZ_CP107981
Coordinates   6844029..6845768 (-) Length   579 a.a.
NCBI ID   WP_328633550.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00356     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6839029..6850768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB28_RS31120 (OHB28_31120) - 6840721..6842007 (+) 1287 WP_266719919.1 RNA polymerase sigma factor -
  OHB28_RS31125 (OHB28_31125) rcrQ 6842104..6844029 (-) 1926 WP_328633549.1 ABC transporter ATP-binding protein Regulator
  OHB28_RS31130 (OHB28_31130) rcrP 6844029..6845768 (-) 1740 WP_328633550.1 ABC transporter ATP-binding protein Regulator
  OHB28_RS31135 (OHB28_31135) - 6845941..6847371 (-) 1431 WP_328633551.1 FGGY family carbohydrate kinase -
  OHB28_RS31140 (OHB28_31140) - 6847440..6847751 (-) 312 WP_327670266.1 YtxH domain-containing protein -
  OHB28_RS31160 (OHB28_31160) - 6848461..6849498 (-) 1038 WP_327670265.1 rod shape-determining protein -
  OHB28_RS31165 (OHB28_31165) - 6849982..6850560 (-) 579 WP_328633552.1 hypothetical protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 62718.82 Da        Isoelectric Point: 5.7802

>NTDB_id=650697 OHB28_RS31130 WP_328633550.1 6844029..6845768(-) (rcrP) [Streptomyces sp. NBC_00356]
MLIKLLRTYLRPYKKPIGLLVLLQFLQTCASLYLPTLNADIIDNGVVNGDTGYILEFGALMLGVTVVQVVCNTGAVYFGA
RTAAAVGRDLRAGIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMTFTLVASAPIMCVGGVVMALGLDVPLSGV
LLAVLPVMAIVLSLIIRKMRPLFRSMQVKLDTVNRVLREQITGNRVIRAFVRDDFEKDRFGAANRDLTNVSVATGRIMAL
MFPFVMTIVNVASIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMMPRAEVCAERIQEVLGTDSSVVP
PRPEASVRELRRHGHLELRGADFGYPGAEEPILRGIDITARPGETTAIIGSTGSGKSTLLGLVPRLYDTTAGTVYVDGED
VRGIDPALMAKTVGLVPQKPYLFSGTVATNLRYGNPDATDDELWHALEVAQAKGFVGKLEGGLDAPITQGGTNVSGGQRQ
RLAIARTLVQRPEIYLFDDSFSALDYATDAALRRALGEETAEATVVIVAQRVSTIRDADTIIVLDEGRVVGTGRHHELMA
DNETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=650697 OHB28_RS31130 WP_328633550.1 6844029..6845768(-) (rcrP) [Streptomyces sp. NBC_00356]
GTGCTCATAAAACTTCTGCGGACCTATCTCCGTCCGTACAAGAAACCCATCGGGCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCTCGCTGTATCTGCCCACCCTGAACGCCGACATCATTGACAACGGTGTCGTGAACGGCGACACCGGCTACA
TCCTGGAGTTCGGCGCCCTGATGCTGGGCGTCACCGTCGTCCAGGTCGTCTGCAACACCGGCGCCGTCTACTTCGGCGCC
CGGACCGCCGCGGCGGTCGGCCGGGACCTGCGGGCGGGGATCTTCGACCGCGTGCAGTCCTTCTCGGCCCGCGAGGTCGG
CCAGTTCGGCGCCCCTTCGCTGATCACCCGCACCACGAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGGTGGCCTCGGCGCCGATCATGTGTGTCGGCGGCGTCGTCATGGCGCTCGGCCTGGACGTGCCGCTGTCGGGCGTG
CTGCTCGCCGTGCTGCCCGTCATGGCGATCGTCCTGTCGCTGATCATCCGCAAGATGCGGCCGTTGTTCCGGTCCATGCA
GGTCAAGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGCGACG
ACTTCGAGAAGGACCGGTTCGGAGCCGCGAACCGGGACCTGACCAATGTGTCGGTCGCCACCGGCCGGATCATGGCACTG
ATGTTCCCGTTCGTGATGACGATCGTGAACGTCGCGTCCATCGCCGTGGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGCATGCAGATCGGTGACCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGAGCGTGATGATGGCCACGTTCA
TGTTCATGATGATGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTCGGCACCGATTCGAGTGTGGTGCCG
CCACGGCCCGAGGCGTCGGTGCGTGAACTGCGCCGCCACGGCCATCTGGAGCTGCGGGGCGCCGACTTCGGCTACCCGGG
CGCCGAGGAACCCATCCTGCGCGGCATCGACATCACGGCCCGCCCCGGCGAGACCACGGCCATCATCGGGTCGACCGGCA
GCGGCAAGTCGACGCTCCTCGGCCTCGTACCGCGGCTGTACGACACCACGGCCGGCACGGTCTACGTGGACGGCGAGGAC
GTCCGCGGGATCGACCCGGCACTGATGGCGAAGACGGTCGGGCTCGTGCCGCAGAAGCCGTACCTGTTCTCCGGCACCGT
CGCCACGAACCTGCGCTACGGCAATCCGGACGCCACCGACGACGAGCTGTGGCACGCGCTGGAAGTGGCGCAGGCCAAGG
GGTTCGTCGGCAAGCTGGAGGGCGGGCTCGACGCGCCCATCACGCAGGGCGGCACCAATGTCTCCGGCGGACAGCGCCAG
CGCCTCGCCATCGCGCGCACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGC
GACCGACGCGGCGCTGCGCCGGGCGCTCGGCGAGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCCCAGCGTGTCTCGA
CGATCCGCGACGCCGACACGATCATCGTGCTCGACGAGGGCCGCGTCGTCGGCACCGGACGCCATCACGAGCTGATGGCC
GACAACGAGACGTACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(353-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.497

97.237

0.394