Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHB28_RS31125 Genome accession   NZ_CP107981
Coordinates   6842104..6844029 (-) Length   641 a.a.
NCBI ID   WP_328633549.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00356     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6837104..6849029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB28_RS31110 (OHB28_31110) - 6837339..6838604 (+) 1266 WP_327663482.1 FAD-dependent oxidoreductase -
  OHB28_RS31115 (OHB28_31115) dnaG 6838660..6840567 (+) 1908 WP_327663483.1 DNA primase -
  OHB28_RS31120 (OHB28_31120) - 6840721..6842007 (+) 1287 WP_266719919.1 RNA polymerase sigma factor -
  OHB28_RS31125 (OHB28_31125) rcrQ 6842104..6844029 (-) 1926 WP_328633549.1 ABC transporter ATP-binding protein Regulator
  OHB28_RS31130 (OHB28_31130) rcrP 6844029..6845768 (-) 1740 WP_328633550.1 ABC transporter ATP-binding protein Regulator
  OHB28_RS31135 (OHB28_31135) - 6845941..6847371 (-) 1431 WP_328633551.1 FGGY family carbohydrate kinase -
  OHB28_RS31140 (OHB28_31140) - 6847440..6847751 (-) 312 WP_327670266.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 68614.75 Da        Isoelectric Point: 4.9581

>NTDB_id=650696 OHB28_RS31125 WP_328633549.1 6842104..6844029(-) (rcrQ) [Streptomyces sp. NBC_00356]
MSGPMGRMAAGAPGSRSMDFKGSGKRLLKRLAAHRTAVVGVLVSVVISVGLSVVGPKILGHATDLLFGGIIGGQMPAGQT
KEQVLDGLRAKGDGGMADMLGGVDFTPGQGVDFGAIGEVLLLGLAVFAVAGLTMMIGTRLANRTINLAVGQLRAELQGKL
SRLPLSYYDQQKRGEVLSRATNDMDNLGQTLQQTMGQMLNSLLTVIGVLAMMFWISWLLALVALITVPLSVFVAAKVGKR
SQPQFVQQWRATGALNAHIEEMYTGHNLVKVFGRQDESAELFAEQNDALYEASFKAQFNSGIMQPLMFFISNLNYVLVAV
VGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVATAERVFELLDAEEQSAEPVPGEKPDNLRGHVEFEH
VAFRYEKDTPLIEDLSLTADPGHTVAIVGPTGAGKTTLVNLLLRFYEVTGGRITLDGVDIAKMSREELRAGIGMVLQDTW
LFGGTIAENIAYGAPKDVTREEVEEAAKAAHADRFIRTLPDGYDTVLDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLASGRTSFVIAHRLSTIRDADTILVMENGAIVEQGSHEALVAADGAYQRLYEAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=650696 OHB28_RS31125 WP_328633549.1 6842104..6844029(-) (rcrQ) [Streptomyces sp. NBC_00356]
ATGAGTGGGCCCATGGGGCGGATGGCGGCCGGTGCGCCCGGTTCGCGTTCGATGGACTTCAAGGGGTCGGGCAAGCGGCT
CCTGAAGCGGCTCGCCGCACACCGCACGGCGGTGGTCGGGGTGCTCGTCTCCGTCGTGATCAGCGTCGGCCTGTCGGTGG
TCGGGCCGAAGATCCTCGGCCACGCCACCGACCTGCTGTTCGGCGGGATCATCGGCGGGCAGATGCCGGCCGGGCAGACC
AAGGAGCAGGTCCTCGACGGCCTGCGCGCCAAGGGCGACGGCGGCATGGCCGACATGCTCGGCGGCGTCGACTTCACGCC
GGGACAGGGCGTCGACTTCGGCGCGATCGGGGAGGTGCTGCTGCTCGGCCTCGCCGTGTTCGCGGTCGCGGGCCTGACGA
TGATGATCGGCACCCGGCTCGCCAACCGGACGATCAACCTGGCCGTGGGGCAGCTCCGCGCCGAGCTTCAGGGCAAGCTG
TCGCGGCTGCCGCTGTCGTACTACGACCAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCGACCAACGACATGGACAACCT
CGGGCAGACGCTCCAGCAGACGATGGGGCAGATGCTCAACTCGCTGCTCACCGTCATCGGCGTGCTCGCGATGATGTTCT
GGATCTCCTGGCTGCTCGCGCTGGTCGCCCTGATCACGGTGCCGCTGTCGGTGTTCGTCGCGGCGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGCGGGCGACCGGCGCGCTCAACGCGCACATCGAGGAGATGTACACCGGCCACAA
CCTGGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCGGAGCTGTTCGCCGAACAGAACGACGCGCTGTACGAGGCGTCGT
TCAAGGCGCAGTTCAACAGCGGCATCATGCAGCCGCTGATGTTCTTCATCTCGAACCTGAACTATGTGCTGGTCGCTGTC
GTCGGCGGGTTGAGGGTGGCCAGCGGGTCGCTCTCCATCGGTGATGTGCAGGCGTTCATCCAGTACTCGCGCCAGTTCTC
GATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCGACGGCCGAGCGGGTCTTCGAACTGC
TCGACGCGGAGGAGCAGTCGGCGGAGCCGGTGCCCGGCGAGAAGCCGGACAACCTGCGCGGGCACGTCGAGTTCGAGCAC
GTGGCCTTCCGCTACGAGAAGGACACGCCGCTCATCGAGGACCTGTCGCTCACCGCCGACCCCGGTCACACGGTGGCGAT
CGTCGGGCCGACGGGCGCGGGCAAGACGACCCTCGTCAATCTGCTGCTGCGGTTCTACGAGGTCACGGGCGGGCGCATCA
CGCTCGACGGCGTCGACATCGCGAAGATGTCGCGGGAGGAGCTGCGCGCCGGGATCGGCATGGTGCTCCAGGACACCTGG
CTGTTCGGCGGGACCATCGCGGAGAACATCGCGTACGGGGCCCCGAAGGACGTCACCCGCGAGGAGGTCGAGGAGGCGGC
GAAGGCCGCGCACGCCGACCGGTTCATCCGGACGCTCCCCGACGGGTACGACACCGTGCTCGACGACGAGGGCACCGGCG
TCAGCGCCGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTCGTGCTCGACGAGGCG
ACCTCCTCCGTCGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGTTGGCCTCCGGCCGGACGTCGTTCGT
GATCGCGCACCGGTTGTCGACGATCCGTGATGCGGACACGATCCTCGTGATGGAGAACGGGGCGATCGTGGAGCAGGGCT
CGCACGAGGCGCTGGTCGCTGCGGACGGGGCGTATCAGCGGTTGTACGAGGCGCAGTTCGCGCAGGCGGTCGCTGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.252

97.192

0.401