Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHB28_RS23405 Genome accession   NZ_CP107981
Coordinates   5109168..5109836 (+) Length   222 a.a.
NCBI ID   WP_328632861.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00356     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5104168..5114836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB28_RS23380 (OHB28_23385) - 5104859..5105461 (+) 603 WP_328632856.1 NAD(P)H-dependent oxidoreductase -
  OHB28_RS23385 (OHB28_23390) - 5105458..5106006 (-) 549 WP_328632857.1 N-acetyltransferase -
  OHB28_RS23390 (OHB28_23395) - 5106112..5107074 (+) 963 WP_328632858.1 ATP-binding cassette domain-containing protein -
  OHB28_RS23395 (OHB28_23400) - 5107071..5107856 (+) 786 WP_328632859.1 ABC transporter permease -
  OHB28_RS23400 (OHB28_23405) - 5107915..5109171 (+) 1257 WP_328632860.1 histidine kinase -
  OHB28_RS23405 (OHB28_23410) vraR 5109168..5109836 (+) 669 WP_328632861.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23790.34 Da        Isoelectric Point: 4.9521

>NTDB_id=650676 OHB28_RS23405 WP_328632861.1 5109168..5109836(+) (vraR) [Streptomyces sp. NBC_00356]
MTTVLIVDDQPMQRFGFRMLLESQDDLRVAGEAGTGTEAVRLAAELAPNVVLMDIRMPGMDGIEATRRITASGPEGPRIL
ILTTFDMDEYAYAGLRAGASGFLIKDALPEELLAGIRAVAAGDAIVAPSLTRRLLDAYVHHLPATAGTPPAADPRIASLT
DREREILTVIAQGWSNAEVAERLHLAESTVKTHVSRILAKTGARDRVQAVIVAYDAKLVEPA

Nucleotide


Download         Length: 669 bp        

>NTDB_id=650676 OHB28_RS23405 WP_328632861.1 5109168..5109836(+) (vraR) [Streptomyces sp. NBC_00356]
GTGACGACCGTCCTCATCGTCGACGACCAGCCCATGCAGCGCTTCGGCTTCCGCATGCTCCTGGAGAGCCAGGACGACCT
ACGGGTCGCGGGCGAGGCGGGCACAGGCACGGAGGCGGTCCGCCTCGCGGCCGAGCTCGCCCCCAACGTGGTCCTGATGG
ACATCCGCATGCCCGGCATGGACGGCATCGAGGCGACGCGCCGCATCACCGCCTCGGGCCCCGAGGGCCCGCGCATCCTG
ATCCTCACCACGTTCGACATGGACGAGTACGCGTACGCGGGCCTGCGGGCCGGAGCCTCCGGCTTCCTCATCAAGGACGC
ACTCCCCGAGGAACTCCTGGCAGGCATCCGCGCGGTGGCCGCCGGCGACGCGATCGTCGCCCCCAGCCTGACCCGCCGCC
TCCTGGACGCGTACGTCCACCACCTCCCGGCCACCGCGGGCACTCCCCCGGCCGCCGATCCACGCATCGCCTCCCTCACG
GACCGCGAACGCGAGATCCTCACGGTCATCGCCCAGGGCTGGAGCAACGCCGAGGTCGCCGAACGCCTGCACCTCGCCGA
ATCGACGGTGAAAACCCACGTCTCCCGCATTCTGGCGAAGACGGGGGCGCGGGACAGAGTGCAGGCGGTGATCGTGGCAT
ACGACGCGAAACTGGTGGAGCCCGCATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-213)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.866

97.748

0.36