Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   OHB28_RS17050 Genome accession   NZ_CP107981
Coordinates   3745667..3747877 (-) Length   736 a.a.
NCBI ID   WP_328632276.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00356     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3740667..3752877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB28_RS17020 (OHB28_17030) rnc 3741250..3742050 (-) 801 WP_327661406.1 ribonuclease III -
  OHB28_RS17025 (OHB28_17035) rpmF 3742058..3742231 (-) 174 WP_030361955.1 50S ribosomal protein L32 -
  OHB28_RS17030 (OHB28_17040) - 3742234..3742878 (-) 645 WP_266718907.1 DUF177 domain-containing protein -
  OHB28_RS17035 (OHB28_17045) - 3743027..3744133 (-) 1107 WP_328632275.1 ATP synthase F0 subunit B -
  OHB28_RS17040 (OHB28_17050) coaD 3744225..3744704 (-) 480 WP_327661408.1 pantetheine-phosphate adenylyltransferase -
  OHB28_RS17045 (OHB28_17055) rsmD 3744731..3745330 (-) 600 WP_327661409.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OHB28_RS17050 (OHB28_17060) recG 3745667..3747877 (-) 2211 WP_328632276.1 ATP-dependent DNA helicase RecG Machinery gene
  OHB28_RS17055 (OHB28_17065) - 3747995..3748966 (-) 972 WP_327671748.1 2-hydroxyacid dehydrogenase -
  OHB28_RS17060 (OHB28_17070) kdgD 3749040..3749954 (-) 915 WP_327661412.1 5-dehydro-4-deoxyglucarate dehydratase -
  OHB28_RS17065 (OHB28_17075) - 3750215..3751756 (+) 1542 WP_327671746.1 ABC transporter substrate-binding protein -
  OHB28_RS17070 (OHB28_17080) - 3751893..3752822 (+) 930 WP_267069098.1 ABC transporter permease -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 79620.42 Da        Isoelectric Point: 5.9821

>NTDB_id=650657 OHB28_RS17050 WP_328632276.1 3745667..3747877(-) (recG) [Streptomyces sp. NBC_00356]
MDLVPALEEPLKKVLGPATAKVMAEHLGLHTVGDLLHHYPRRYAERGELTRLADLPLEEHVTVVAQVATARILKFNGGRG
QRLEVTITDGSGELQLVFFGRGIHKPHKDLLPGTRAMFAGKASVFNRKMQLAHPAYQLLNAESSDEAAEAVGSWAGALLP
IYPATAKLESWKIAKAVDLVLPSAREAEDPLPESLREGRGLAPLPEALLKIHRPQTKDDVAGARDRLKWDEAFVLQVALA
RRRFAETQLTAVPRVPKPDGLLTAFDAKLPFTLTDGQQKVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDA
GGQAAMLAPTEVLAQQHHRSITEMMGELAQGGMLGGAEHATKVVLLTGSMGMAARRQALLDLATAEAGVVIGTHALIEDK
VQFDDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADK
PHFLARAWERVREEVSNGHQAYVVCPRIGDDEDEKPKKGAAKKQSAEDEAEKRPPLAVLDVAEELARGPLQGLKVEVLHG
RMQPDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVTEMPEAAP
ARARLGAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLAVIEDEEIIAEAREEATKVVSADPELKSLPALRVA
LDALLDEEREQYLDKG

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=650657 OHB28_RS17050 WP_328632276.1 3745667..3747877(-) (recG) [Streptomyces sp. NBC_00356]
ATGGATCTCGTGCCCGCGCTCGAAGAACCACTGAAGAAGGTGCTCGGCCCCGCCACCGCGAAGGTGATGGCCGAGCATCT
AGGCCTGCACACGGTCGGCGACCTGCTCCACCACTACCCGCGCAGATACGCGGAGCGGGGCGAGCTCACCCGCCTCGCGG
ACCTGCCGCTCGAGGAGCACGTGACGGTCGTCGCGCAGGTCGCCACCGCCCGCATCCTGAAGTTCAACGGCGGCAGGGGC
CAGCGCCTCGAAGTCACCATCACCGACGGCAGCGGCGAGCTCCAGCTCGTCTTCTTCGGCCGCGGCATCCACAAGCCGCA
CAAGGACCTGCTGCCCGGTACGCGCGCGATGTTCGCCGGCAAGGCCTCGGTCTTCAACCGGAAGATGCAACTGGCGCACC
CCGCCTACCAGTTGCTCAACGCCGAGTCCTCCGACGAGGCCGCGGAGGCGGTCGGCTCGTGGGCCGGGGCCCTGCTGCCG
ATCTACCCGGCCACGGCCAAGCTGGAGTCCTGGAAGATCGCCAAGGCCGTCGACCTGGTGCTGCCCAGCGCGCGCGAGGC
CGAGGACCCGCTGCCCGAGTCGCTGCGCGAGGGCCGCGGCCTCGCCCCGCTGCCCGAGGCCCTGCTCAAGATCCACCGGC
CGCAGACGAAGGACGACGTCGCCGGCGCCCGGGACCGCCTCAAGTGGGACGAGGCGTTCGTCCTTCAAGTGGCCCTCGCC
CGGCGCCGCTTCGCGGAGACCCAGCTGACCGCGGTCCCACGCGTACCGAAGCCGGACGGCCTGCTGACCGCCTTCGACGC
GAAGCTCCCCTTCACGCTCACCGACGGCCAGCAGAAGGTCTCCAAGGAGATCTTCGACGACCTGGCCACCGAGCACCCGA
TGCACCGGCTGCTCCAGGGCGAGGTGGGCAGCGGTAAGACGATGGTGGCGCTGCGCGCCATGCTCGCCGTCGTCGACGCG
GGCGGTCAGGCCGCGATGCTCGCGCCCACCGAGGTCCTCGCCCAGCAGCACCACCGGTCCATCACCGAGATGATGGGCGA
GCTGGCGCAGGGCGGGATGCTGGGCGGGGCCGAGCACGCCACCAAGGTCGTCCTGCTCACCGGCTCGATGGGCATGGCCG
CCCGCCGCCAGGCCCTGCTCGACCTGGCCACGGCCGAGGCCGGCGTCGTCATCGGTACGCACGCGCTGATCGAGGACAAG
GTGCAGTTCGACGACCTGGGCCTGGTCGTCGTGGACGAGCAGCACCGCTTCGGCGTGGAACAGCGCGACGCCCTGCGCTC
GAAGGGCAAGCAGCCGCCGCACCTCCTGGTCATGACGGCGACGCCGATTCCGCGCACGGTCGCCATGACGGTCTTCGGTG
ACCTGGAGACGTCCGTCCTCGACCAGCTGCCGGCCGGCCGCTCGCCGATCGCCAGCCATGTCGTACCGGCGGCCGACAAG
CCGCACTTCCTGGCCCGCGCCTGGGAGCGCGTACGGGAAGAGGTGAGCAACGGCCACCAGGCGTACGTCGTCTGCCCCCG
CATCGGCGACGACGAGGACGAGAAGCCCAAGAAGGGCGCCGCCAAGAAGCAGTCCGCCGAGGACGAGGCGGAGAAGCGGC
CGCCGCTCGCCGTGCTCGACGTCGCGGAGGAGCTGGCGCGCGGCCCGCTCCAGGGCCTCAAGGTCGAGGTCCTGCACGGC
CGCATGCAGCCCGACGACAAGGACGCCGTGATGCGCCGCTTCGCCGCGGGGGAGACGGACGTCCTGGTGGCGACGACCGT
CATCGAGGTCGGTGTGAACGTGCCGAACGCGACGGCGATGGTGATCATGGATGCCGACCGGTTCGGTGTCTCGCAGCTCC
ACCAGTTGCGCGGCCGCGTGGGCCGTGGGTCGGCGGCGGGTCTGTGCCTGCTGGTCACCGAGATGCCGGAGGCCGCCCCC
GCGCGTGCCCGCCTCGGCGCCGTCGCCGCCACGCTCGACGGGTTCGAGCTCTCCCGCATCGACCTCGAACAGCGCCGCGA
GGGGGACGTCCTCGGCCAGGCCCAGTCCGGCGTCCGCTCGTCCCTGCGGATGCTCGCCGTGATCGAGGACGAGGAGATCA
TCGCGGAGGCGCGCGAGGAGGCGACGAAGGTGGTTTCGGCGGACCCGGAACTGAAGTCCTTGCCGGCCCTACGGGTGGCG
CTGGACGCCCTCCTCGACGAGGAACGCGAACAGTACCTGGACAAGGGCTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(13-175)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(651-713)

Helicase conserved C-terminal domain (Helicase_C)

(548-623)

DEAD/DEAH box helicase (DEAD)

(277-447)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38

95.109

0.361