Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHB28_RS15635 Genome accession   NZ_CP107981
Coordinates   3418689..3419474 (+) Length   261 a.a.
NCBI ID   WP_327661174.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00356     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3413689..3424474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB28_RS15620 (OHB28_15635) - 3413925..3414464 (+) 540 WP_327661171.1 TerD family protein -
  OHB28_RS15625 (OHB28_15640) - 3414581..3417475 (-) 2895 WP_327661172.1 vitamin B12-dependent ribonucleotide reductase -
  OHB28_RS15630 (OHB28_15645) nrdR 3417613..3418158 (-) 546 WP_327661173.1 transcriptional regulator NrdR -
  OHB28_RS15635 (OHB28_15650) dinR/lexA 3418689..3419474 (+) 786 WP_327661174.1 transcriptional repressor LexA Regulator
  OHB28_RS15640 (OHB28_15655) - 3419569..3421605 (-) 2037 WP_328632134.1 ATP-dependent DNA helicase -
  OHB28_RS15645 (OHB28_15660) - 3421646..3423649 (-) 2004 WP_328632135.1 IucA/IucC family siderophore biosynthesis protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28136.95 Da        Isoelectric Point: 8.0892

>NTDB_id=650650 OHB28_RS15635 WP_327661174.1 3418689..3419474(+) (dinR/lexA) [Streptomyces sp. NBC_00356]
MTTTADSATITAQGRAQGRLEPVHAMNDTAMSQEGPKPGRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNSAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=650650 OHB28_RS15635 WP_327661174.1 3418689..3419474(+) (dinR/lexA) [Streptomyces sp. NBC_00356]
GTGACCACGACCGCAGACAGTGCCACCATCACTGCCCAGGGCCGCGCCCAGGGCCGACTCGAGCCGGTGCATGCCATGAA
TGACACAGCCATGAGCCAGGAGGGCCCCAAGCCGGGGCGCTCCCTGCCCGGCCGGCCCCCAGGAATCCGCGCGGACAGCT
CGGGGCTCACGGATCGGCAGCGCCGCGTCATCGAGGTCATCCGGGACTCGGTGCAGCGTCGGGGGTACCCGCCGTCCATG
CGGGAGATCGGCCAGGCGGTCGGCCTGTCCAGCACATCGTCGGTCGCGCACCAGCTGATGGCACTCGAGCGCAAGGGCTT
CCTGCGCCGGGATCCGCACCGCCCGCGCGCGTACGAGGTCCGTGGCTCGGACCAGCCCAGCGCGCAGCCCACGGACACCG
CGGGAAAGCCCGCGGCTTCGTATGTGCCCCTGGTGGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTC
GAGGACGTCTTCCCGCTGCCCCGGCAGCTGGTCGGTGACGGTGAGCTGTTCGTCCTGAAGGTCGTCGGCGACTCGATGAT
CGAGGCCGCGATCTGCGACGGGGACTGGGTCACGGTCCGCCGCCAGCCCGTCGCGGAGAACGGTGACATCGTCGCCGCGA
TGCTCGAAGGCGAGGCCACCGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTCTGGCTCCTGCCGCACAACTCCGCGTAC
CAGCCGATTCCCGGTGACGAGGCGACGATCCTCGGCAAGGTAGTGGCCGTTCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

81.226

0.375